Salmo salar (Atlantic salmon): 106613394
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Entry
106613394 CDS
T04363
Symbol
ddx6
Name
(RefSeq) DEAD-box helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106613394 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106613394 (ddx6)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106613394 (ddx6)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106613394 (ddx6)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106613394 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
106613394 (ddx6)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106613394 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
106613394
NCBI-ProteinID:
XP_014071054
UniProt:
A0A1S3T388
LinkDB
All DBs
Position
ssa09:139288899..139315442
Genome browser
AA seq
493 aa
AA seq
DB search
MSTTSTQNPVILGHSNQNGQLRGPVVKPAGGQGSGGGSHQTQQPGQMKQASSTINNGTGS
SSTQLAKANPTANTVIKPGDDWKRNLTLPPKDMRMRTSDVTATKGNEFEDYCLKRELLMG
IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAMGI
VPTRELALQVSQICIQISKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLI
KKGVAKVNQVQMMVLDEADKLLSQDFVVMMEEVLSYLPRQRQILLYSATFPLSVQKFMNS
HLSKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELL
AKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFD
FPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIRPIPGSIDKSLYV
AEYHSENGEEVKL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccaccagtacccagaacccagttatactgggccattccaaccagaatggccag
ctccgaggcccggtggtgaagcctgcaggagggcagggcagcggaggaggcagtcatcag
acacagcagcccggccagatgaagcaggcctccagcacaatcaacaacggtactgggtct
agcagcacccaactggctaaagctaaccccacagccaatactgtcatcaagcctggagat
gactggaagaggaatttgacgctccctccaaaagacatgaggatgagaacttcggacgta
acggcaactaaaggcaacgagtttgaagactactgcctgaagagggagctgctgatggga
atctttgagatgggctgggagaaaccctctccgatccaggaggagagcatccccatagcg
ttatccgggagggacattctggccagggccaagaacgggacaggaaagagcggagcctac
ctcattcccttactggagcgcattgacctgaagaaggactgcatacaagctatgggcatc
gttcccaccagagaactggctttgcaggtgagccagatctgtatccagatcagcaaacac
atgggaggtgtcaaagtcatggccacaacgggcggcaccaacctccgcgatgacatcatg
aggctcgacgagacagtccacgttgtgattgccacccctgggaggatcctggacctcatt
aagaagggtgtggccaaagtcaatcaggttcagatgatggttttggatgaggcagacaag
ctgctgtcccaggactttgtggtgatgatggaagaggtactaagctacctacccagacag
agacagattctgctctactctgctacctttcctctcagcgtgcagaagttcatgaactcc
catctgtccaagccctacgagatcaacctgatggaggagttgaccctgaagggggtcacc
cagtattatgcctatgttacggagaggcagaaggtccactgtctcaacacgctcttctcc
aggctccagatcaaccagtctataatcttctgtaactcgtctcagagggtggagctgctg
gccaagaagatatctcagctgggctactcgtgtttctacatccatgccaagatgagacag
gagcaccgtaacagagtgttccacgacttcagaaacggcctctgccggaatctcgtctgc
acagacctcttcacgagaggtatcgacattcaggctgtgaatgttgtgatcaactttgac
ttccccaagctgggagagacgtacctgcatcgcattggcagatctggtcgttttggtcac
ctgggtctggccatcaacctgatcacatacgatgaccgcttcaatctcaagggcatcgag
gaacagctgggaacagagatcaggcccatccccggcagcatagacaagagcctgtatgtt
gcagagtaccacagtgagaatggagaggaggtcaagctgtga
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