Salmo salar (Atlantic salmon): 106613629
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Entry
106613629 CDS
T04363
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106613629 (LSM4)
09123 Folding, sorting and degradation
03018 RNA degradation
106613629 (LSM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106613629 (LSM4)
03041 Spliceosome [BR:
sasa03041
]
106613629 (LSM4)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106613629 (LSM4)
mRNA degradation factors
5'-3' decay
Lsm complex
106613629 (LSM4)
Spliceosome [BR:
sasa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106613629 (LSM4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
106613629
NCBI-ProteinID:
XP_014071562
UniProt:
B5XA57
LinkDB
All DBs
Position
ssa10:14811364..14822811
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AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGAGRGVFGGRGRG
MPGVGRGQQQQEKKPGGGKPQGVKNQH
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgctacctctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aacggagagacgtataacggacacttggtcagttgtgacaactggatgaatatcaactta
cgagaagtcatctgcacctcaagggatggagataagttttggaggatgcccgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgaaatcatcgacatggtaaag
gaggaggtggtgtccaagggccgcgggcgaggaggcatgcagcagaacaaacagcagggc
aagggccgagggggaggagcaggagcaggtagaggtgtatttggaggccgtggccggggt
atgccaggagtaggcagaggccagcagcagcaggagaagaagcctggtggtggcaaacct
cagggagtcaagaaccagcactga
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