Sphaerochaeta associata: MUG09_00675
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Entry
MUG09_00675 CDS
T08141
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sass
Sphaerochaeta associata
Brite
KEGG Orthology (KO) [BR:
sass00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sass03009
]
MUG09_00675 (rlmD)
Enzymes [BR:
sass01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MUG09_00675 (rlmD)
Ribosome biogenesis [BR:
sass03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MUG09_00675 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
PrmA
Methyltransf_25
MTS
N6_N4_Mtase
Methyltransf_15
Methyltransf_4
TRM5-TYW2_MTfase
UPF0020
Methyltransf_11
Methyltransf_32
PCMT
Methyltransf_12
Methyltr_RsmB-F
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
UOM51287
LinkDB
All DBs
Position
156946..158103
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AA seq
385 aa
AA seq
DB search
MKRYAKCPLARTCGACQLMDYSYPNQLEMKMRYVDELLGQLGPIAPIQGMDDPTLYRTKV
QATFGYDWKGSLVSGIYQEGTHLLVPIRSCMVQHPLADEILKSIRNLATRFQITAYDEDE
GYGHLRHVLIKISRKTGEAIVVLVCGQWPIPSSDNFIAALKQKHPEITTIALNMNREHTS
MVLSEIPIKVLWGKGYIEEELCSLTFRISPSSFFQVNVEQAQVLYSLAMRMARIGKEDVV
IDAYCGTGTIALIAAKEGARYVLGIESNEQAVEDAKLNAERNNLTNAEFICADASVELKE
MAKAKRVCDVLFLDPPRSGSDERFLAAAIKLAPKRIVYISCNPRTLDRDLRYLLRFSDYQ
VRGIQPVDMFPHTEHLETVVLLTSE
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgttatgcaaaatgtcccttggcccgcacctgcggagcctgtcaattgatggat
tactcctaccctaaccaattggagatgaaaatgcgctatgtggatgagctgctcgggcag
ctgggtcccatcgctcccatacaaggtatggatgatccaacgctgtatcgcaccaaagta
caggcaaccttcggctatgactggaaaggaagtctggtaagcggcatctatcaggagggt
acccatctgttggtgcccatccgttcgtgcatggtccagcatccactggctgatgagatt
ctcaagagtatccgaaatctggcaactcgctttcagataaccgcctatgatgaggatgag
gggtatggccaccttcgccatgttttgatcaagatcagccgcaagacaggtgaggccatc
gtggtgcttgtctgcggtcagtggccgataccgtcatcggacaacttcatcgctgccctg
aagcagaagcatcccgagatcaccaccatcgcattgaacatgaaccgcgagcacaccagc
atggtgctcagcgaaatccccatcaaggtactctggggcaagggctatattgaggaggaa
ctctgctccctcaccttccgcatctctccttcctccttcttccaggtcaatgtcgagcag
gcccaagtgctgtattcgttggccatgcgtatggcccggattggtaaggaagacgtggtt
atcgatgcctactgcgggaccggaacgattgccttgatagccgccaaggagggtgcaagg
tatgttcttggtattgaatccaatgaacaggctgtcgaggatgccaagctgaatgccgag
cggaacaacctgaccaatgcagagttcatctgtgccgatgcctcggtggagttgaaggag
atggcaaaagccaagcgcgtttgtgatgtattgttcctcgatcccccgcgcagcggcagt
gacgagcgctttctggcagcggctatcaagctcgctcccaagcgcatcgtctacatctcc
tgcaaccccaggacgctcgaccgggaccttcgctacctgctcaggttcagcgactaccaa
gtacggggaatacagccggtggatatgttcccgcataccgagcaccttgagacggtggtg
cttctgactagtgagtaa
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