Sphaerochaeta associata: MUG09_04540
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Entry
MUG09_04540 CDS
T08141
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sass
Sphaerochaeta associata
Pathway
sass02020
Two-component system
sass02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sass00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MUG09_04540 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MUG09_04540 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sass03021
]
MUG09_04540 (rpoN)
Transcription machinery [BR:
sass03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MUG09_04540 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
HTH_Tnp_ISL3
Sigma70_r4
HTH_3
HTH_23
HTH_31
Phage_CII
HTH_21
Motif
Other DBs
NCBI-ProteinID:
UOM52044
LinkDB
All DBs
Position
complement(982541..983947)
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AA seq
468 aa
AA seq
DB search
MEFSPHLSLSQKQQLKLSPQLLQSFELMALPLAELQQKIKSEIESNPALELPSSWDFSYE
RFAQQSQQKESSKVDDTYSDSSSYGSDYGGGYDYEASDRQQKFMENALSEEETLQEHLLS
QLGCESLSEEEYTVGQILITNIDANGFFLEDPHDILTSQQAAHLQKLLKILHQFEPAGVA
VKDWRESLILQATLKGLKDEDLVHFKALVNGNLELMRAGKQSQVAKNLGIDEMELDALYS
FLKTLTPFPGQGFASGPQQYVIPDLSIKAEDGELVLSMNNSSLPDLRVSADFEALAQDLG
NTDEAKKAQQYIQNQLKSANSLIFQIQVRNQTLYRLAQVLLVQQRDFFLFGPQYIKPLTQ
KEVAAQIGVHETTVSRISTAKWIDTDWGIISVKKLFSNAVGDEGAELSKQAAKETIRQIL
EEHQGQKALSDQKISDILKERGISVARRTVAKYRNELNIDPSFIRGTN
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaccacatctttcactctcccagaaacagcaacttaaactcagccctcaa
ctgcttcagtcattcgaactgatggccctacccttggctgagctgcaacagaaaatcaag
agtgaaattgaatcgaatcccgctcttgagcttccgtccagttgggacttctcttatgaa
cgattcgcacagcagagccagcaaaaggaatcaagcaaagtcgatgacacctactctgat
tcctccagctacggcagcgactacggtggcgggtatgactacgaggccagcgaccgccag
cagaaattcatggaaaatgctctctctgaagaagagacgctgcaggaacacctgctcagc
cagttgggttgtgaatccctcagcgaagaggagtacaccgtcggccaaattctcatcaca
aacatcgacgccaacggcttttttctagaggacccgcacgatattctgacctcacagcaa
gctgcgcatctacagaagcttctgaagatcctccaccagttcgaaccggccggcgtcgca
gtgaaggattggcgtgaatcgctgattctccaagccactcttaaagggctcaaggatgag
gacctggttcatttcaaggctctggtcaacggcaatcttgaattgatgcgggcgggcaaa
cagagtcaggtggcaaaaaatctgggaatcgatgaaatggagctcgatgccctgtactcg
ttcctgaaaaccctcaccccgtttcccggtcaggggttcgccagcgggccgcagcagtat
gtcattcccgacctaagcattaaagcagaggatggggaactggtgctcagtatgaataac
tcctcgcttcccgacctcagggtcagtgcggactttgaggcgttggcacaggacttgggc
aataccgatgaggcaaaaaaagcccagcagtacatccaaaatcaattgaagagtgcaaat
tctctcattttccaaatccaggtcagaaaccagaccctttaccgcctggcccaggtttta
ttggtccagcaacgcgatttcttccttttcggaccccagtacattaagccgttgacacaa
aaagaagttgccgctcaaatcggggtgcatgaaaccacggtaagcagaatttcaacggcc
aagtggatagataccgactggggcattatttccgtaaaaaagctcttcagcaatgcggta
ggggacgaaggggcggaactttcaaaacaggctgcaaaggagaccatccgccagatactg
gaagaacaccagggacagaaagcactttcggaccaaaaaatctccgatattctcaaggag
cgcggcatttcagttgcacgccgtacggtggccaagtaccgtaatgagcttaatatcgat
ccctcgttcatcagaggaaccaactga
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