Sphaerochaeta associata: MUG09_05255
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Entry
MUG09_05255 CDS
T08141
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sass
Sphaerochaeta associata
Pathway
sass03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sass00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUG09_05255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sass03019
]
MUG09_05255
03009 Ribosome biogenesis [BR:
sass03009
]
MUG09_05255
Enzymes [BR:
sass01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MUG09_05255
Messenger RNA biogenesis [BR:
sass03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MUG09_05255
Ribosome biogenesis [BR:
sass03009
]
Prokaryotic type
rRNA helicases
MUG09_05255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UOM52182
LinkDB
All DBs
Position
complement(1146449..1148323)
Genome browser
AA seq
624 aa
AA seq
DB search
MSELTNFADLGLSAQTIAAIKAKGFEEPTKIQSACIPLLLKDQVDVIGQAQTGTGKTAAF
GLPILEFVDPSLYQVQALILAPTRELAVQTAEEINSLKGDRRLEIAAVYGGASMELQLRK
LKRGVHVVVGTPGRILDHLRRGSLHLEHLKFMVLDEADEMLDMGFIDDIEEVLKQTPAEK
RMLCFSATMPQPIQRLAERFMRDPHLVKIQQDTMTSNLTDQIYVEVKESDKLEALTRIID
MEESFYGIIFCRTKVQCDEIGRKLIDRGYDAEPLHGDLSQKQRELILHKMRERTISIIVA
TDVAARGIDISDLTHVINFSLPEDPDAYIHRVGRTGRAGKTGIAITFVAPREFKRFSFIK
KVSKTDIRRESVPEASEIIRIKRARILSRLTALSDEDAQSSHFLPIAEQLLDGKRPEVVV
AALLDHFYKDQLDVSKYQHIGGGRDDRRGDRPVRDEESGFTRLFIARGRKDGLDKRMLVD
YLIEQVGAEDRDIQDVSVREEFSFVSAPLQVAERILKTFGDQGPEGKPIITRAKPDNPNG
KNLSVRTRGEERRPSYAERRPRRGDRDDYQPYGRDSYGGEDRYEGRPAFADDRVGRVHGK
YNTSKAKKGSFPKKGPSSRRRYND
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagttaacaaactttgcggacctagggctgtccgcacaaaccattgccgccatt
aaagcgaaaggcttcgaagaaccaaccaagattcagagcgcatgcataccgctgctcctc
aaggatcaggtcgacgttattggccaggcacaaaccggaaccggtaaaaccgccgctttc
ggcctccctattctcgaatttgtagacccatcactgtatcaggtccaagcactcattctc
gcacccactcgtgaacttgctgtacaaaccgctgaagagatcaactccctgaagggagac
cgaaggttggaaattgccgctgtatacggcggtgcctccatggaactgcaactgcgtaaa
ctcaagcggggcgtgcatgtcgttgttggaactcccggtcgtatcctcgaccacctcaga
cgcggttccctgcacctcgagcatctcaagttcatggtactcgacgaagcagacgaaatg
ctcgatatgggtttcatcgatgatatcgaagaagtactgaaacagacacccgctgaaaag
cgcatgctctgtttctccgcgaccatgccccagccgatacagaggcttgccgaacggttc
atgcgtgatccgcatctggtcaagatccagcaggataccatgaccagcaacctcaccgac
caaatctatgttgaggtgaaggagtccgacaagttggaggctcttacccgcatcatcgac
atggaagagagtttctacggcattattttctgccgaaccaaggtccaatgtgatgaaatc
ggcagaaagctgatagaccgtgggtacgatgccgaacctttgcatggagatctttcccag
aaacagcgagaactgatcctccacaaaatgcgtgagagaaccatcagcattattgttgcc
accgacgtagcggcacgtggcatcgatatttccgatctcacccacgtcatcaacttctca
ctgcccgaagatccggatgcatacatccaccgcgtaggaagaaccggacgagcaggaaag
accggcatcgccatcacttttgtagctccccgtgagttcaagcgcttctccttcatcaag
aaagtctcaaagactgatatcagacgcgaatccgtccctgaagcaagtgagatcatcagg
atcaagcgggcgagaattctcagccggcttaccgccctctccgatgaagatgcacagagc
agccacttcctgccgatcgccgaacagttgttggacggtaaaaggcccgaagtcgtagtt
gcggctcttttggatcacttctacaaagaccagcttgatgtttccaagtaccagcacatc
ggtggcggaagggatgatcgaaggggcgaccgacctgtacgtgacgaggagagcggattc
acccgcctgttcattgcacgcggcaggaaggacggacttgacaagcgaatgttggtcgac
tacctcatcgagcaggtgggggccgaagacagggacatccaggatgtttccgttcgtgag
gagttctcttttgtcagcgccccgcttcaggttgccgagcgaatcctgaagaccttcggc
gaccaaggtccggaagggaagcccatcattaccagggcaaagcccgacaatcccaacggg
aaaaacctctcggtaagaacccgtggggaggaaaggcgtccatcctatgcggaacgcaga
cccagacgaggagaccgtgacgactaccagccgtacggtagggactcctatggcggtgaa
gatcgttacgaaggccgacctgcttttgccgatgaccgtgtcggacgggttcatggaaag
tacaacacttccaaggccaagaaaggatctttcccgaaaaaaggtcccagcagcagacga
agatacaacgactaa
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