Streptomyces calvus: CD934_17440
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Entry
CD934_17440 CDS
T06819
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sast
Streptomyces calvus
Brite
KEGG Orthology (KO) [BR:
sast00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sast03016
]
CD934_17440
Enzymes [BR:
sast01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CD934_17440
Transfer RNA biogenesis [BR:
sast03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CD934_17440
Prokaryotic type
tRNA splicing ligases
CD934_17440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDI70283
UniProt:
A0A514JSF5
LinkDB
All DBs
Position
4106435..4107628
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AA seq
397 aa
AA seq
DB search
MSYVELPGAKVPIRMWTDPATVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKIEQVIPVGRGMHDDPVDPG
RLHAFPTGGWDDFWSRFGGVADAVKFREERATKQMGTLGGGNHFVEVCVDTEGSVWLMLH
SGSRNIGKELAEHHIGVAQKLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
SIMMALLKDVVRKEFKKAKPVFEPEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRRMSRNAAKRRFSTKDLQEQTRGVECRKDSG
VVDEIPAAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagctgccgggcgcgaaggtgccgatccggatgtggacggacccggcg
accgtggaggagggcgcgctccagcagctgcggaacgtcgccaccctgccgtggatcaag
ggcctggcggtgatgccggacgtgcactacggcaagggcgcgacggtcggctcggtcatc
gcgatgcgcggcgcggtgtgcccggcggcggtgggcgtcgacatcggctgcggcatgtcg
gcggtgcggacgtcactgacggcgaacgacctccccggtgacctgtcccggctgcggtcg
aagatcgagcaggtgatcccggtcggccggggcatgcacgacgaccccgtcgacccgggt
cggctgcacgccttcccgacgggcggctgggacgacttctggtcgcggttcggcggcgtg
gcggacgcggtgaagttccgtgaggagcgcgccacgaagcagatgggaacgctgggcggc
ggaaatcacttcgtggaggtttgcgtcgatacggagggatccgtctggctgatgctgcac
tccggttcccgcaacatcggcaaggaactcgccgagcaccacatcggcgtcgcccagaag
ctcccgcacaaccagggcctggtcgaccgcgacctcgccgtcttcgtcgcggacactccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
tcgatcatgatggcgctcctgaaggacgtggtccgcaaggagttcaagaaggcgaagccg
gtcttcgagcccgagatcagcgcccaccacaactacgtggccgaggagcgctacgacggc
atggacctgctggtgacccgcaagggcgcgatccgcgcgggctccggcgagtacgggatc
atccccgggtccatgggaacgggctcgtacatcgtcaagggcctcgggaacgccgcgtcg
ttcaactcggcgtcgcacggcgcgggtcggcggatgagccgcaacgcggcgaagcgccgc
ttctccacgaaggacctgcaggagcagacgcggggcgtggagtgccgcaaggactccggt
gtcgtggacgagatcccggccgcctacaagccgatcgagcaggtgatcgaccagcagcgg
gacctcgtcgaggtcgtcgccaagctgaagcaggtcgtctgcgtcaagggctga
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