Streptomyces calvus: CD934_18470
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Entry
CD934_18470 CDS
T06819
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sast
Streptomyces calvus
Pathway
sast03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sast00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CD934_18470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sast03021
]
CD934_18470 (rpoB)
03400 DNA repair and recombination proteins [BR:
sast03400
]
CD934_18470 (rpoB)
Enzymes [BR:
sast01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CD934_18470 (rpoB)
Transcription machinery [BR:
sast03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CD934_18470 (rpoB)
DNA repair and recombination proteins [BR:
sast03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CD934_18470 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QDI70450
UniProt:
A0A514JSZ7
LinkDB
All DBs
Position
4306725..4310210
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNDAWKARVEE
ALENGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGGDEPLDAGVLTTDDIIATIKYLVKLHAGETETVGESGRSIMVETDDIDHFG
NRRIRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRINPFGFIETPYRKVVDGQVTDEVDYLTADEEDRFVIAQANATLNDEMRF
VENRILVRRRGGEVDYVPGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIRSESPLVGTGMEYRSAVDAGDVVKAEKAGVVQEVSADYITTANDDGTYITYRLAK
FARSNQGTSVNQKVIVNEGDRVIEGQVLADGPATQNGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVIAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWDVSGLADEWAQRLQAIGADRVEPRTNVATP
VFDGAREDELAGLLEHTIPNRDGDRMVLPSGKARLFDGRSGEPFPDPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgaccgcgaatacgaacaacggcgccagcaccgccccg
ctgcgcatctcctttgcaaagatcaaggagcccctcgaggttccgaaccttctcgcgctg
cagaccgagagctttgactggctgctcggcaacgacgcgtggaaggctcgcgtcgaggag
gctctcgagaacgggcaggacgtccccaccaagtccggtctggaggagatcttcgaagag
atctccccgatcgaggacttctccgggtcgatgtcgctgaccttccgcgaccaccgcttc
gagccgcctaagaactccatcgacgagtgcaaggagcgcgacttcacgtacgccgccccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagaccgtc
ttcatgggcgacttcccgctcatgacgaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtcgtctcccagctggtgcgctcgccgggcgtctacttcgactccagcatcgac
aagacgtccgacaaggacatcttctccgccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggcgtccgcatcgaccgcaagcgcaagcag
tccgtcaccgtcctcctgaaggcgctcggctggaccaccgagcagatcctcgaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccgcccacccgcgaggccgcg
cagacgctgctcgagaacctgtacttcaaccccaagcgctacgacctcgccaaggtcggc
cgctacaaggtgaacaagaagctcggcggggacgagccgctggacgccggcgtgctcacc
accgacgacatcatcgccaccatcaagtacctggtgaagctgcacgccggtgagaccgag
acggtcggcgagtccggtcgctcgatcatggtcgagaccgacgacatcgaccacttcggc
aaccgccgcatccgcaacgtcggcgagctgatccagaaccaggtccgtacgggtctcgcc
cgtatggagcgcgtcgtgcgcgagcgcatgaccacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcgggtctgacgcacaagcgtcgt
ctcaacgcgctcggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgtgac
gtgcacccctcgcactacggccgcatgtgcccgatcgagacgcccgaaggcccgaacatc
ggtctgatcggctcgctcgcctcgtacggccggatcaacccgttcggcttcatcgagacg
ccgtaccgcaaggtcgtcgacggccaggtcaccgacgaggtcgactacctgaccgccgac
gaagaggaccgcttcgtcatcgcgcaggccaacgccacgctcaacgacgagatgcgcttc
gtcgagaaccgcatcctggtccgccgccgcggcggcgaggtcgactacgtccccggcgac
gacgtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatc
ccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgtcag
gccgtgccgctgatccgctccgagtccccgctcgtcggcaccggcatggagtaccgctcc
gccgtcgacgccggcgacgtggtcaaggccgagaaggcgggtgtggtccaggaggtctcc
gcggactacatcaccaccgccaacgacgacggcacgtacatcacgtaccgcctggccaaa
ttcgcccgctccaaccagggcacctcggtcaaccagaaggtcatcgtcaacgagggcgac
cgcgtcatcgagggccaggtcctcgccgacggtccggccacccagaacggcgagatggcg
ctcggcaagaacctgctggtcgcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgcatcggtgcc
gaggtcatcgccggcgacatcctcgtcggcaaggtgaccccgaagggtgagaccgagctg
acccccgaggagcgcctgctgcgcgcgatcttcggtgagaaggcccgtgaggtccgtgac
acctcgctgaaggtgccgcacggcgagaccggcaaggtcatcggcgtccgcgtcttcgac
cgcgaggagggcgacgagctgccgccgggcgtgaaccagctggtccgcgtctacgtcgcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggcgtc
atctccaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtgccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccagggctgggacgtctccggcctcgccgacgagtgggcg
cagcgcctccaggcgatcggcgcggaccgggtcgagccccgtaccaacgtggccaccccg
gtcttcgacggcgcccgcgaggacgagctcgccggtctgctggagcacaccatcccgaac
cgcgacggcgaccgcatggtcctcccgtccggcaaggcgcggctgttcgacggtcgctcg
ggtgagccgttcccggacccgatctccgtcggctacatgtacatcctcaagctgcaccac
ctggtcgacgacaagctgcacgcccgttcgaccggtccgtactccatgatcacccagcag
ccgctgggtggtaaggctcagttcggtggccagcggttcggcgagatggaggtgtgggca
ctcgaggcgtacggcgccgcctacgcgctccaggagctgctgaccatcaagtccgacgac
gtcaccggccgcgtgaaggtctacgaggccatcgtcaagggcgaaaacatccccgagccc
ggcatccccgagtccttcaaggtgctcatcaaggagatgcagtccctgtgcctgaacgtg
gaggtgctgtccagcgacggtatgtccatcgagatgcgcgacaccgacgaggacgtcttc
cgcgctgcggaggagcttggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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integrated database retrieval system
