Streptomyces calvus: CD934_22300
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Entry
CD934_22300 CDS
T06819
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sast
Streptomyces calvus
Pathway
sast03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sast00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD934_22300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sast03019
]
CD934_22300
03009 Ribosome biogenesis [BR:
sast03009
]
CD934_22300
Enzymes [BR:
sast01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CD934_22300
Messenger RNA biogenesis [BR:
sast03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CD934_22300
Ribosome biogenesis [BR:
sast03009
]
Prokaryotic type
rRNA processing factors
CD934_22300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QDI71109
UniProt:
A0A514JUS5
LinkDB
All DBs
Position
5187912..5192069
Genome browser
AA seq
1385 aa
AA seq
DB search
MLEPIEPTEGSEPNTPSDTLPPRRRRRAASRPAGPPAAAADTTAETVAPAIPAAGAADLT
GAADPAEDPELVEPEGADAETDAEADVTAEADKETEAAQAAPAAPRRRRVVRRAAAPAGA
PASAAAAETVVPVTQSAPETTPAPEPAPVAADTSEDAAPRRARRRATRSVTSPTAPAAAT
ADTAAAETAAAPERTAATETPAVTESPAAPEAAGVAEAAEEAAPRRTRRRASRRASAPAE
VPAEAATSAESAPEPAQTPAAETPAETTGTPEAPEAPVAEPAAQASEPAGAPAEDAAPRR
RRRVVRKAAAGFAEPARPARAAAGTAEPAEAESSRRRPARPAVAVFQPPVFTEPRFQTPE
RAAAEAAAEVAEPAEPEEPEETRELPEEQPAASRRRRRRRGAGDEAEVAPAAEAAPQARD
EDEAEEADEQAEDHADAEDQDENESAGSRRRRRRGGRRRRRGESAETDAESGDTDTERVS
ADQASQDAEDTAEQVEEDAEEAAESAEDHDESGAGSTSSRRRRRRRRRAGDSGGEAEPAA
DDPERTVVKVREPRKAAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLA
RREAVERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAA
FIDIGKGRNAVLYAGEVNFEALGMSGGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQ
VSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKVVPEDAGVIVRTAAEGASEEELR
RDVERLQAQWEEIKKKSKNGGSAPTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDDAWETI
HGYVAHVAPDLADRLQRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVV
IDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVL
RRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPA
AAGGGKRRKRARAGAAEQPHEHETAASVETAEQEAEAETAAEVAAEAAEPVALPAPEFTP
DEELYSSAAEAEAAATRGRTRRRASRRVSSPAGAPKRETAGADRQRAEESGKAVAEAPTA
QDVTVAEEAARPVQPESAAEALAEPAAVEDAVVPPAAEEAAPKGRTRRRATRKVSAPAGS
PAGAEAAVVTVAESAAAEVTEPAPAQAPSEAPAEAEAPARPRRRAVRKPTTSTASEETAV
VVLPSAPAEESAPAAETAESAGAAEPAEAPAAAQEAASEEAAPAKKAARKAAKKATVKKA
AAKKTTAKTATAKKTAAKKTTAKKTAAKTTKSAAKKTTAKKAASKKTVAAAEQPSPSVTA
VTDEG
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgatcgagcccaccgagggctccgaaccgaacacccccagcgacaccctg
ccgccgcgcaggcggcgccgtgccgcgtcccgcccggcgggcccgcccgccgccgcggcc
gacacgacggccgagaccgtcgcaccggccataccggccgccggggccgccgacctcacc
ggggccgccgaccccgccgaggaccccgagctcgtcgagcccgagggcgccgacgcggag
accgacgccgaggccgacgtcacggccgaggcggacaaggagaccgaggccgctcaggct
gcgcccgccgcgccccgccgccgtcgggtggtccgccgtgcggccgcgcccgccggggct
ccggcgtcggcggcggccgccgagaccgtcgtaccggtgacgcagtccgcgcccgagacg
actccggcgcccgagccggccccggtcgccgccgacacctccgaggacgccgctccgcgg
cgtgcccgccgccgcgcgacgcgcagcgtgacctcgccgacggcgcccgccgccgcaacc
gcggacaccgccgccgccgagaccgcggcagccccggagcgcaccgccgccaccgagacg
cccgcggtcaccgagagccccgcggcccccgaggccgccggggtcgccgaggcggccgaa
gaggccgctccgcgccgtacccggcgtcgtgcctcgcgccgcgcctccgcgcccgccgag
gtgccggccgaggccgcgacctccgccgagtccgcgcccgagcccgcgcagacccccgcg
gccgagacccctgccgaaaccacgggaacccccgaggctcccgaggcccccgtcgcggag
cccgccgcgcaggcgtccgagcctgccggtgcccccgccgaggacgccgctccgcgccgt
cgtcgccgggtggtccgcaaggccgccgccggtttcgccgagcccgcgcgtcccgcccgg
gccgccgccgggaccgccgagcccgccgaggccgagtcctcgcggcggcgccccgcgcgt
ccggccgtggccgtgttccagccgccggtgttcaccgagccccgcttccagaccccggag
cgcgccgccgccgaagcggccgccgaggtcgccgaaccggcggagccggaggagccggag
gagacccgggaactgcccgaggagcagcccgccgcctcccgccgccgtcgccggcgccgg
ggtgcgggcgacgaggccgaggtcgcgcccgccgccgaggccgcgccgcaggcccgtgac
gaggacgaggcggaggaggccgacgagcaggccgaggaccacgccgacgccgaggaccag
gacgagaacgagtcggcaggttcgcgccgtcgccgccgtcgcggtggccgtcgccgccgc
cgtggcgagtccgccgagaccgacgccgagtccggtgacacggacaccgagcgggtctcc
gccgaccaggcgtcccaggacgccgaggacaccgccgagcaggtcgaggaggacgccgag
gaggcggccgagtcggccgaggaccacgacgagtccggcgccgggtccaccagcagccgc
cgccgtcgccgtcgtcgtcgccgcgccggtgacagcggtggcgaggccgagcccgccgcc
gacgacccggagcgcaccgtcgtcaaggtgcgcgagccgcgcaaggcagccgagccgtcg
gacgaggtgcagtccatcaagggctccacgcgtctggaggccaagaagcagcgccgccgc
gagggccgcgagcagggccgccgccgggtgccgatcatcaccgaggccgagttcctggcc
cgccgcgaggccgtcgagcgcgtcatggtggtccgccagcacggcgaccgcacgcagatc
ggcgtcctggaggacggcgtgctcgtcgagcactacgtcaacaaggagcaggccacctcg
tacgtcggcaacgtgtacctgggcaaggtgcagaacgtgctgccgtcgatggaggccgcc
ttcatcgacatcggcaagggccgcaacgccgtgctgtacgcgggcgaggtcaacttcgag
gcgctcggcatgtccggcgggccgcgccgtatcgagtccgccctcaagtccggccagtcc
gtcctcgtccaggtgacgaaggacccgatcggccacaagggcgcccgcctcaccagccag
gtctccctcccgggccgctacctcgtgtacgtccccgagggctcgatgaccggcatcagc
cgcaagctgcccgacaccgagcgggcccggctgaagaccatcctcaagaaggtcgtcccc
gaggacgcgggcgtcatcgtgcgcaccgccgccgagggagcgagcgaggaggagctgcgc
cgcgacgtcgagcggctccaggcgcagtgggaggagatcaagaagaagtccaagaacggc
ggcagcgcgccgacgctgctgtacggcgagccggacatgaccgtccgggtcgtgcgggac
atcttcaacgaggacttcaccaaggtcgtcgtcagcggtgacgacgcctgggagaccatc
cacggctacgtcgcccacgtggcgccggacctggcggaccggctgcagcgctggaccagc
gaggtcgacgtcttcgccacgtaccggatcgacgagcagctcgccaaggcgctggaccgc
aaggtgtggttgcccagcggcggttcgctggtgatcgaccggaccgaggcgatggtcgtc
atcgacgtcaacaccggcaagttcaccggtcagggcggcaacctcgaggagaccgtcacc
aggaacaacctggaggcggccgaggagatcgtgcgtcagctcaggctgcgcgacctcggc
ggcatcatcgtgatcgacttcatcgacatggtgctggagtccaaccgggacctggtgctg
cggcgcctgctggagtgcctgggccgggaccgtacgaagcaccaggtcgccgaggtgacc
tcgctgggcctggtccagatgacccgcaagcgggtcggccagggcctgctggagtcgttc
tcggagacctgcgtccactgcaacgggcgcggtgtcatcgtccacctcgaccagcccgcg
gccgcgggcggcggcaagcgccgcaagcgggcccgtgccggtgcggccgagcagccgcac
gagcacgagaccgccgcgagcgtcgagacggccgagcaggaggcggaggcggagacggcg
gccgaggtcgccgccgaggccgccgagccggtcgcgctgcccgccccggagttcacgccg
gacgaggagctgtacagcagcgccgccgaggcggaggccgcggccacccgtgggcgtacg
cgccgccgggcgagccgacgggtgtcgtccccggcgggcgcgccgaagcgggagaccgcc
ggcgccgaccggcagcgtgccgaggagtccgggaaggcggtggccgaggccccgaccgcc
caggacgtgacggtcgccgaggaggccgcccgtccggtgcagccggagtcggccgccgag
gcgctcgccgagcccgccgccgtcgaggacgccgtggttccgccggccgccgaggaggcc
gcgcccaagggccgtacccgtcgccgggccacccgcaaggtgtccgcgccggccggttcc
ccggcgggtgccgaggccgcggtggtcacggtcgccgagtccgcggccgccgaggtgacg
gagccggcgcccgcgcaggccccgtccgaggcgcccgccgaggcggaggccccggcccgc
ccgcgccgccgtgcggtgcgcaagccgaccacctccaccgcgtccgaggagacggccgtc
gtggtcctcccgtcggccccggcggaggagagcgcgcccgctgccgagaccgcggagtcc
gccggggccgcagagcccgcggaggcacccgccgccgcgcaggaagccgcctccgaggaa
gccgctccggccaagaaggccgcccgcaaggcggccaagaaggccacggtgaagaaggcc
gccgcgaagaagaccacggcgaagactgcgacggcgaagaagaccgccgccaagaagacg
acggccaagaagacggcggcgaagaccaccaagtcggccgccaagaagacgaccgcgaag
aaggcggcgtcgaagaagaccgtggccgcggccgagcagccgtcgccgtcggtcacggcc
gtgaccgacgagggctga
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