Syntrophus aciditrophicus: SYN_00063
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Entry
SYN_00063 CDS
T00346
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SYN_00063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sat03021
]
SYN_00063
03400 DNA repair and recombination proteins [BR:
sat03400
]
SYN_00063
Enzymes [BR:
sat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SYN_00063
Transcription machinery [BR:
sat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SYN_00063
DNA repair and recombination proteins [BR:
sat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SYN_00063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
QRPTase_N
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
ABC76173
UniProt:
Q2LQ86
LinkDB
All DBs
Position
306953..311098
Genome browser
AA seq
1381 aa
AA seq
DB search
MEDVFSYFEKPKDPIRFNAIKISIASPDKILSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGRYKRMKHRGVVCEKCGVEVIKSKVRRERMGHITLATPVAHIWFLKSL
PSRIGNVLDLTLKELERILYFESWIVLDPRNTPLRKKDLLSDEEYNDLREQYGPDGFQAG
IGAEAVRKLLEEVDLEGLDVELRDELKTASSDTKRKKVIKRLKVIEALRKSGNRPEWMIL
TVLPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPEIIIRNEKRML
QEAVDVLFDNGRRGRAITGTNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGP
DLRLHQCGLPKKMALELFKPFVYNRLQEKGYVTTVKSAKKMVERETAEVWDALDEVVREY
PVMLNRAPTLHRLGLQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQTE
ARVLMMSTNNILSPANGKPIIIPSQDVVLGIYYLTRSKEDVLGHGMSFSNPEEVRSAFDA
GAVELRARIKVRIDDELKETTVGRVILYEIIPEAISFDVINKVMNKKELANLIDYCYRLC
GEKTTVILADRLKDMGFKYATHSGMSFAVRNLNIPKNKKDIVVRADRDVLEIQKQYMDGL
ITDGERYNKVIDLWAQATEKIASEMMGGIETEEQITTEGKKVVESFNPIYMMADSGARGS
NAQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQDCIITQQDCGTVDGISVSALMEGGEIIETAGERVLGRVVLEDIMDPFT
GEVLVGANQEIDESLSEKIDRAGIESVRIRSVLTCKAKYGVCARCYGRDLGHGHLVNIGE
AVGIIAAQSIGEPGTQLTMRTFHIGGTAKFEEHSTLDSRHDGIVKYVDLNYVVSKIGETV
VMSRHGEIHVLDEQLRSRGKYTVPYGAHLKVKDGQSVKRGDRMAEWDPFSIPILAEVDGT
VKFGDIIEGKTMQEQVDEVTGLSRKVIVEFKGADLRPRVSLKDATGKTAKVPGTNAAARH
LLSVGVNIVVSEGDQVKAGDIIAKIPRETTKTKDITGGLPRVAELFEARKPKDFAVISEI
DGVVSYGKDAKGKRKVIVTPEIGDEKEYLIPKGKHVSVQEGDRVIAGEALMSGVNNPHDL
LMIKGEKALARYLVDEVQEVYRLQGVKINDKHMEVIVRQMLRRVKVIDPGDTPFMADEQV
EKFRFQEENEKAIARGEQPAIGEPVLLGITKASLSTQSFISAASFQETTRVLTEASLAGK
VDYLRGLKENVIMGRLIPAGTGLVMYRKLGIKTVADEDAESVEIEGDENSNKKSLDMHAA
N
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
gtggaagatgtttttagctattttgaaaaaccaaaagatccgattcgctttaatgcgata
aaaatttcgattgcctcaccggacaagatcctttcctggtcttacggcgaggttaaaaag
ccggaaaccattaattaccgaactttcaagcctgaacgtgacgggcttttctgcgcaaaa
atatttggtcctgtgaaggattatgagtgtctctgcggacgctacaagcgaatgaagcac
aggggcgtggtctgtgagaagtgtggcgttgaagtcatcaagtcgaaggttcgtcgtgag
aggatggggcatattaccctggcaacgccggttgcccatatctggtttctcaagagtcta
cccagcaggatcggaaatgtcctggaccttactttaaaggaattggagcggattctctat
tttgaatcctggatcgttctcgatcccaggaacactccgctgcggaagaaggatttactt
tcggatgaggagtataacgatctgagagagcagtacggtccggatggattccaggctgga
atcggtgccgaggctgtgagaaaacttcttgaagaagtcgatcttgaggggctcgatgta
gaactgcgggatgagttgaagaccgcctcgtcggataccaagaggaagaaagtcatcaag
cgattgaaggttatcgaggctctacggaaatcgggaaatcgtccggagtggatgattctg
acggtgctacccgttatccctccggatctgcgtccccttgttcctctggatggggggcgg
tttgccacctcggatttgaatgacctttaccgccgtgtgatcaaccggaataacaggctt
aagcgccttcaggagttgaacgctcctgaaattattattcgcaatgaaaaaagaatgctt
caggaagccgtagacgttctttttgataacggcagaagagggagggccataacggggacc
aacaagaggcccttaaaatctctttccgatatgctcaaggggaaacaggggcgattcaga
cagaatcttctgggtaagcgagtggattattcaggccgttccgtgatcaccgttggtccc
gacctgcggctgcatcagtgtggattgcctaaaaaaatggccctcgaattgtttaaacca
tttgtttacaacaggctacaggaaaaagggtacgtcacaaccgtcaaaagcgcaaagaag
atggtcgagcgggagacggcggaggtctgggatgctttggatgaagttgtccgggagtat
ccggttatgctgaaccgtgcgccgacgctgcatcgactgggactgcaggcttttgagccg
gtattgatagaaggaaaagccattcagctccatcctctcgtctgcacggcctttaacgcg
gatttcgacggcgatcagatggccgttcacgtaccgttatcgattgaggcccagacggaa
gcccgggttctcatgatgtcgacgaacaatattctttcaccggcaaatggcaagcccata
atcatccccagccaggatgttgtgctgggaatatattatctgacgcgttcaaaggaagat
gtcctgggacatggcatgagcttttccaatcccgaggaggttcgctccgccttcgacgcc
ggagcggtggaactacgcgccaggataaaagtgcgaatcgatgatgaattgaaggagacg
accgtaggacgggtcattttgtatgagattattccggaagccatttcttttgatgtcatt
aataaagtgatgaacaaaaaagaactggctaatctgatcgattactgctaccggctctgt
ggggaaaagacgacggttattcttgcagaccgcctgaaagatatgggtttcaaatatgcg
acccattcagggatgtcttttgcggtaagaaacctgaatatcccaaaaaacaagaaagat
attgttgttcgggcggaccgcgacgttctggaaattcaaaagcagtacatggacggtttg
attaccgacggtgaacgatacaataaggtgatcgatctatgggcccaggcgacggaaaaa
atcgcttcggaaatgatggggggtatcgaaaccgaggagcagattacgacggaagggaag
aaagttgtagaaagcttcaatccgatctacatgatggcagattccggagcgagaggcagt
aatgcacagattcgacagttggccggtatgcgggggttgatggcgaaaccttcaggagaa
attattgaaacgccgattacggcaaacttccgggaaggtttgaccgttctgcagtacttc
atttcaacacacggagcaagaaaggggcttgccgatacagcgctgaaaacggcgaactcc
ggttacctgacacggcggctggttgacgtcgctcaggattgcattatcacccagcaggat
tgcggaacggtggatggcatatccgtgtcggccctgatggagggcggagagattatagag
acagctggagaacgtgttcttgggcgtgtcgtgcttgaagatatcatggatccttttacc
ggcgaagtcctcgtcggtgcaaatcaggaaatcgatgaatccctttcggaaaaaattgac
agggcggggattgaaagcgtgagaatccgttctgttctgacctgcaaggccaagtatggc
gtttgtgcacggtgttacggccgggacttgggtcatggtcaccttgtgaatatcggagaa
gccgtggggattattgctgcccagtccattggagaaccgggaacccagttgactatgaga
actttccatatcggaggtacggcgaaatttgaagagcactcaactctggattcccggcac
gatggcattgtgaaatacgttgacctcaactacgtagtcagcaagataggggaaacggtt
gtcatgagccgccatggggaaattcacgtccttgatgagcagttgagaagtcgaggcaag
tatactgtcccatacggtgcccacctgaaagttaaagacggtcagtccgtcaaaagaggg
gatcgcatggccgagtgggatcctttctcaatacccattcttgctgaagtcgatggaacc
gtgaagtttggtgatatcatcgaaggaaagacgatgcaggaacaggttgacgaagttacc
ggtctttcccgtaaagttattgttgaattcaagggggcggacctcaggcctcgagtttcc
ttaaaggatgccacaggaaagacagccaaggttcccggcacaaacgcggcggcaagacat
cttctttcagtaggcgtgaacatcgttgtctctgaaggagaccaggtcaaagccggtgac
attatcgccaagatccccagagaaacgaccaaaacgaaagatattaccggtggtcttccg
agggttgcagagctttttgaagcgcggaagcccaaggatttcgccgttatttctgaaatc
gacggcgtggtgtcctacggcaaggatgccaagggaaaaagaaaggtgatcgtaactccg
gaaatcggcgatgaaaaggaatacctcatccccaaaggaaagcatgtcagcgtccaggaa
ggtgaccgtgtgatcgccggggaagctttaatgagcggtgtcaataatcctcatgatctt
ctcatgatcaagggagaaaaagccctggctcgctaccttgttgatgaggttcaggaagtt
taccgactgcagggcgtgaagatcaatgacaaacatatggaagtcattgtacgccagatg
ctgcggcgggtgaaagttatcgatcccggagacactcccttcatggctgatgagcaggtc
gaaaagttcaggttccaggaggagaatgaaaaggccattgccagaggagagcagccggcc
attggggaacctgttcttctgggtatcaccaaggcttctctgagtacgcagagctttatt
tctgctgcctcattccaggagacgacacgggttcttacggaagcgagtctggcgggcaag
gtggattacctccgaggtttgaaggaaaatgtgattatgggtagattgattcctgccggg
actgggcttgtgatgtatcgcaagctcggtattaaaacggtggcggacgaggatgctgaa
tcagtggaaatcgagggtgatgaaaatagcaataagaaatctcttgacatgcacgcggcg
aattga
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