Syntrophus aciditrophicus: SYN_00200
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Entry
SYN_00200 CDS
T00346
Name
(GenBank) exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sat
Syntrophus aciditrophicus
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sat03400
]
SYN_00200
DNA repair and recombination proteins [BR:
sat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SYN_00200
Archaeal homologous recombinant proteins
SYN_00200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
ABC_tran
nSTAND3
AAA_22
NTPase_1
cobW
AAA_30
KH_SLS1_1
AAA_21
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABC76656
UniProt:
Q2LRE3
LinkDB
All DBs
Position
complement(788583..792254)
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AA seq
1223 aa
AA seq
DB search
MRILGVRFKNLNSLAGEWQVDFTRPAYISDGIFAITGPTGSGKTTLMDAVCLALYGSTPR
LGKVTKSGNEIMSRQTGECFAEVTFETAKGRYRCHWSQQRAYKKPDGELQQARHEIVDAD
SGRVLKSKINEVGTFIEKVTGLDFERFTRSMLLAQGGFAAFLQAPPHERAPILEQITGTE
IYSRISMKVHERRSEELDKLELLQAELKGIAILSEEEERALQDTLRKKQDWETELAGRIK
EGEKALAWLEGMAVLEKELEELDRKRQDFELRQKAFEPDSHRLERSLLAMSLEGDFRGIA
TLRELQTQEMEELHDAVATLPEKEKTATEGLFARKKAESLLNETRTRQHSEGEVLKKVRD
LDSRLGEQEKQLVEKDRAIAEIESQEKEYGNLLEQGKQKWKEVHAALEAIYAYREKFAAD
EALIANFSAIERGFASLRDVEAKWNKACRELVAAAAQKDSALAELADREGEHEKIRRVFE
KTRKAHEDVREELSVILQGREFSTWRNEMDVLRERERLLIQTEEILKRIDRIAPALVSLK
TQLEILNADRDRIISELKACSDHKALLEKTTAALEAQVSLLNRIRDLEEERKRLADGRPC
PLCGATEHPYARGNIPAPNEVEEELQKTKNELNSASNLLNRLEAERARTEAGIQHSKNER
EEKAEALKADEKQAADFLSRLQIEASPPERAIRIRAELATVMAITAEMEKIIRQAEGKDK
QEKSAQDALDKVRKTFERAEKALQEARHNAEKAAADHERSERDCATLTEEMDKARADALA
DVKPFGITRLPLEKIDVLLNGLRARKEAWHARENEKTLQQKTLDELKAGIEKREALLASL
EEDLAARRRDREKLVRDRESLFGARRALFGEKIADEEEKRLTAEVEKAGNALEKARENCG
KIEKEISMLRERIVSLQIRTKQRAGELMKTKQHWDDRLRRSGFADESDFLSSCLTEEERQ
GLLEKKQILLREKAELDARRQDRLDTLAVQQEKKLTDQSSEVLKEQIRTGDMELKQLRLD
IGGMVQNLSDNESRRKNLQERLQRIDRQKRECARWDDLHQLIGSADGRKFRNFAQGLTFE
MMTVHANRRLREMTDRYLLIHDEAHPLELNVIDNYQAGEIRSTKNLSGGESFIVSLALAL
GLSQMASRNVRVDSLFLDEGFGTLDEDALETALETLAGLRQDGKLIGIISHVAALKERIG
TQIQVIPETGGRSILSGPGCRRM
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgaggattctcggcgtacgattcaagaacctgaattcccttgccggcgaatggcaggtc
gacttcacccgacccgcgtacatatccgacgggatctttgccattaccggccccacgggg
tcaggaaagacaacgctcatggacgccgtgtgccttgcactttatggcagtacgccgcgg
ctgggcaaggtcacgaaaagcggcaatgaaatcatgtcgcgccagacaggtgaatgcttc
gcagaagtgaccttcgaaaccgcgaaaggacgttaccgctgccactggagccagcagcgg
gcctataagaaaccggacggcgagctgcagcaggccagacatgaaatcgtcgatgccgac
tccggccgggtcctgaaatcaaagatcaacgaagtcggtaccttcatcgaaaaggtcact
gggctggatttcgagcgtttcacccgttcgatgcttcttgcccagggcggattcgccgct
tttcttcaggcccctcctcatgaacgggcgcccatccttgagcagattaccggaacggaa
atctacagccgcatatccatgaaggttcacgaacgccgttccgaagagttggataaactc
gaactgttgcaggcagaactcaagggcattgcaatcctgagcgaagaagaagagcgggcc
ttgcaggataccctgagaaaaaagcaggattgggaaaccgaactcgccggaagaatcaag
gagggagaaaaggccctggcctggctcgaaggaatggcggtcctggagaaagagctggaa
gaactggaccggaaacggcaggacttcgaactgcgtcaaaaggcatttgaaccggactca
cacagactggaacgatccctcctggcgatgagtctggaaggcgacttccggggtattgcc
accctgagggaactgcagactcaggaaatggaagaacttcatgatgccgtcgccacgctc
cccgaaaaggaaaagaccgccacagagggattattcgcgaggaaaaaggcggaaagtctc
ctgaatgagacacggaccagacagcactcggagggggaggtgcttaaaaaggtgcgtgac
ctcgattcccgactgggtgagcaggaaaagcagcttgtggagaaggaccgggcgattgca
gagatagaaagtcaggaaaaggaatatggaaatctgctcgaacagggaaagcagaaatgg
aaagaggtccatgcggccctggaagcgatttacgcataccgggaaaaatttgccgcggat
gaggccctgatcgccaacttcagcgccattgaaagaggatttgcctcgcttcgcgatgtg
gaggcaaagtggaacaaggcatgtcgggaactggttgcggccgcagctcaaaaggattca
gccctggccgagcttgccgacagggagggcgagcatgaaaaaatccgacgggtctttgaa
aaaacccggaaggctcacgaggatgtgagagaggaactttccgtcatccttcagggacgc
gagttcagcacgtggcgcaacgaaatggatgttctcagggaacgggagcggcttctgatc
cagacagaggaaatcctgaaacgaatcgaccggatcgccccggcgctggtcagtctgaaa
acacaactggaaatcctgaacgctgaccgggacagaattatcagcgagctgaaagcctgc
tccgatcataaagcgctcctggaaaaaactactgccgccctggaagcccaggtatcgctt
ctcaatcgtatccgcgatctcgaagaagaacggaaacggctggcggacggccggccctgc
cctctgtgcggcgctacggaacatccctacgcgcggggaaacataccggctcccaatgag
gtggaggaggagcttcagaaaacaaaaaatgagttaaacagcgcatcgaatctattgaac
agactggaagccgaacgcgcgcggaccgaagccgggattcaacacagcaaaaacgaacgg
gaagaaaaggcggaggctctgaaagcggatgaaaaacaagccgccgattttctgtcgcga
ctgcagatcgaggcttctccgccggaacgcgccatcaggatacgtgcggaactcgccaca
gtgatggcgataactgccgaaatggaaaaaatcattcgtcaggccgaagggaaggacaag
caggaaaagtcggcgcaggatgccctggataaagtgagaaaaacctttgaacgggcggaa
aaagccttgcaggaagcgcggcacaatgcggagaaggccgctgccgatcatgagcggtct
gaaagggactgtgccacactgacagaagaaatggacaaggcccgcgctgacgcccttgcc
gatgtgaaaccgtttggaatcactcgcctgccattggaaaaaatcgatgttctgttgaac
ggcctcagggcgcgcaaggaagcctggcacgcccgggagaatgaaaaaacccttcaacag
aagacgcttgacgagctgaaggccggcattgaaaagcgtgaggccctgctggcaagcctg
gaggaagatctggcggcacgacgccgggaccgggaaaagctggtcagagatcgggaatcc
ctgttcggcgcccggcgggcgctgtttggagaaaagattgccgatgaagaagaaaaacgg
cttacggcagaggttgaaaaagcgggcaatgcccttgaaaaggcccgggagaactgcgga
aaaattgaaaaggaaatcagcatgctgcgggaaaggatcgtctctctgcagatcaggacg
aaacagcgcgccggggagctgatgaagacgaaacagcactgggatgaccggcttcgcagg
tctggatttgcagatgagtcggacttcctgtcctcgtgcctgaccgaagaggagaggcaa
gggcttcttgaaaagaaacagatcctgctcagggagaaggcggaactcgacgcccgccgt
caggacaggctggataccctcgccgtccagcaggagaagaagctgacggatcagtcttcc
gaagttttgaaggaacagatccgcaccggcgatatggagctgaaacaactgaggttggat
atcggcggcatggttcagaacctctccgacaacgagagccggaggaaaaatctgcaggaa
cgccttcagaggatcgaccgccagaaaagggaatgcgcccgctgggacgacctgcatcag
ctcatcggttccgccgacggcaggaaattccggaactttgcgcagggcctcactttcgag
atgatgacggtccatgccaaccgtcgcctcagagaaatgacggatcgctatcttctcatc
cacgacgaagcgcaccccctggagctcaacgtcatcgacaattatcaggccggcgaaatc
cgctcaacgaaaaatctctccggaggcgaaagtttcatcgtgagcctcgccctggccctc
ggcctttcccagatggcaagccggaatgtccgggttgattcgctctttctcgatgaggga
ttcggcactctcgacgaagacgccctggaaaccgccctggaaacgctggcgggattgcgg
caggacggcaagctcatcggcatcatctctcacgtggcggccctgaaggagcgcatcggc
actcagatacaggtcattcccgaaacaggcggccgcagcatcctgtccggccccggctgc
cgaagaatgtga
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