Syntrophus aciditrophicus: SYN_00204
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Entry
SYN_00204 CDS
T00346
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SYN_00204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sat03400
]
SYN_00204
Enzymes [BR:
sat01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SYN_00204
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SYN_00204
DNA repair and recombination proteins [BR:
sat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SYN_00204
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Auto_anti-p27
NFACT_N
Ribosomal_S13
Zn_ribbon_6
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
ABC78980
UniProt:
Q2LY20
LinkDB
All DBs
Position
3113121..3114056
Genome browser
AA seq
311 aa
AA seq
DB search
MLATLNGMAGFYAGRFCMRVDFLCRPAVTVKLEKSVSAPGWTDRTRKEEHMPELPEVETL
CRQLRQKVPHAKIKGTFILDSKLGKLDNLKGRGIASVTRLGKRIVLGLDDGRSLEIHLRM
TGRLLWQEKPDIGEKPPHSRFILDLTPGRIIIVDPRRFATLSLVADAAKGNAAVDALKPG
CPEALKEKGCNRSRSIKSFLMDQSIIGGIGNIYACEILYRAGLNPLRRTADLTSEDWRRV
GSAMVEVLSKAVVCRGTSISDWRDLFGCKGEYQKELRVYGREGKKCPHCGGIIQRVRLLG
RGTWFCPNCQA
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaactttgaatggaatggccggtttttacgcgggtcgcttctgcatgcgcgtc
gactttctctgccgccctgctgtcactgtcaaactcgaaaagagtgtgtcagcgcccgga
tggacagaccggacaagaaaagaggaacacatgcctgaactccccgaagtagaaaccctt
tgccgtcaactgcggcagaaagtacctcatgcaaagatcaagggaactttcatccttgac
agcaaactggggaagctggacaatctgaaaggccgcggcatcgcttccgtgactcgtctt
gggaaacggatcgtccttgggctggatgacggcagatcgctggaaattcacctgagaatg
acaggtcggcttctctggcaggaaaaaccggatatcggagaaaagccgccgcacagccgc
ttcatcctcgatctgacccccggtcggatcattatcgtcgatccccggcgttttgccacg
ttgtctcttgtcgcggatgcggcaaaggggaacgcggctgtcgacgccctgaagcccgga
tgcccagaggcactgaaagaaaagggatgcaaccgaagtcggtccattaaatcttttctc
atggaccagagcatcatcggcggaattggtaatatttatgcctgcgaaatcctctatcga
gcaggattgaatcctctccgcaggacggccgacctgacttcagaggactggcggcgcgtc
ggaagcgccatggttgaggtcctttcaaaggccgttgtttgccggggaacgtccatttcc
gactggcgcgatctttttggctgcaaaggcgagtatcagaaggaacttcgcgtatatggg
cgcgaggggaaaaagtgcccgcactgcggaggaatcattcagcgagtccgccttttgggt
cggggaacgtggttctgtccgaactgccaggcttga
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