Syntrophus aciditrophicus: SYN_00896
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Entry
SYN_00896 CDS
T00346
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03030
DNA replication
sat03430
Mismatch repair
sat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SYN_00896
03430 Mismatch repair
SYN_00896
03440 Homologous recombination
SYN_00896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sat03032
]
SYN_00896
03400 DNA repair and recombination proteins [BR:
sat03400
]
SYN_00896
Enzymes [BR:
sat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SYN_00896
DNA replication proteins [BR:
sat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SYN_00896
DNA repair and recombination proteins [BR:
sat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SYN_00896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF6282
Motif
Other DBs
NCBI-ProteinID:
ABC77491
UniProt:
Q2LTT3
LinkDB
All DBs
Position
1661645..1665112
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AA seq
1155 aa
AA seq
DB search
MKIETFVHLHVHTQYSLLDGTIRIKDLISKAKEFGMQAVAMTDHGNMFGTIDFYQAACKE
GIKPIIGCELYVAPKTRFEKTGGSIGDTARHLLVLAKDYQGYQNLMKLSSLGYLDGFYYR
PRVDKELLKKYHKGLIALSACLNGEIANYILKDKFKDALLAAENYRQIFGEHNFYLEIME
NGLPEQKTANEGLLEISRQLSIPVAATNDCHYLNREDAESHEVLLCIQTGKTLDDSDRMR
FSTDAFYFRSPDDMKQLFNYCPEAVENTKEIADRCNLSFEFGKFYLPKFEVSSDETLEDR
LEKVAIQGLAERMPPIVDERGEEVRGIYEKRLADELKIIKSMGFAGYFLIVSDFVSYAKR
MNIPVGPGRGSAAGSLVAYALTITDIDPIRYDLFFERFLNPDRISMPDIDIDFCPEGRGD
IIRYVTEKYGEDKVSQIITFGKMQARAVIRDVGRALNIPYGEVDSIAKLVPNILNISLDD
AMEMEPRLQEAAKRDEKIRKLLKLSKSLEGLNRHASVHAAGVVISDVPLVERVPLYKSPK
DDVTTQFSMNDLSTVGLTKFDFLGLKTLTVIKNALSFIKEGLGTDLDLKNLPLNDADTFK
LLSKGETDGVFQLESDGMKEILVRMKPDCIEDLIALIALYRPGPMNMIPEFIARKQGKTP
IIYEIDQLEGILKETYGVILYQEQVMQIASVIAQYSMSEADTLRKVMGKKDTAKMETERP
KFMEGAKANGIPEQKTRKIWEQMETFASYGFNKSHSTAYAMVTYQTAYLKAHYPVEFMAA
LLTSEKDNRDKIIKYIHVCKEMGIAILPPDINESQRDFSVAGNRIRFGLAAIKNVGLGAI
DAMISSRQKGGEFLSFEDFCNRTDLKKVNKRVLESLIKCGAFDSTGQRRRQLMSEYENII
EISQKRQKDKASKQASFFDDMEDLGVEEKRSYANSSAAEIQEWDPKELLAHEKEFLGFYV
TGHPLEGYASKISMVANTDSAGILEKGDKEPVSLAGIVSGIREVFTRKKEIMAYVSLEDL
KGATDVIFFPEIYKKVTDILHGDAPIFVKGILDVAEENVKVIAEEASLLSETEYNPFSSV
HFMVDIENNGTSDHLVDRLHQLTKNYKGKYDAYLHLINGSCETKIYLGDKAKLSISPELK
REANIILGEGVMIFM
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgaaacgtttgttcacctccatgtccatacgcagtacagtctgcttgacggc
accatccggatcaaggatctgatctcgaaggctaaagaattcggaatgcaggccgtcgcg
atgacggatcatggaaatatgttcggtacgattgatttttatcaggcggcatgcaaagaa
ggaatcaagccgattatcggttgcgaactttatgtggccccaaaaacccgtttcgaaaaa
acaggcggcagcatcggcgatacagcacgtcaccttctcgtattggccaaggattatcag
ggctaccagaatctgatgaaattgtcctcccttggttatctggatggattttactaccgt
ccccgggtagacaaagaactattaaagaaatatcacaaaggactcattgctctaagtgcc
tgtctgaatggggagattgctaattatatattaaaggataagtttaaggatgccttatta
gctgctgagaattacaggcagatatttggtgagcacaatttttatctggagatcatggag
aacggcttgcccgaacagaaaaccgcaaacgaaggattgctggaaatctccagacagctt
tcgatacccgtggctgccaccaatgactgccattaccttaatcgggaagacgcagaatcc
catgaagttttgttatgtatccagacagggaagacactggatgactccgaccggatgaga
ttttcaactgatgctttttatttccggtcgccggatgatatgaagcagttgtttaactat
tgtccggaagcagtagagaatacaaaggaaatagctgatagatgcaacttgtcttttgag
ttcggtaaattttatcttccaaagttcgaagtgagcagcgatgaaactctggaagatcgc
ctggaaaaagtggcgattcagggtcttgcggaacgaatgcccccaattgttgacgaaaga
ggggaggaagtcaggggaatatacgaaaagagactggctgacgaactgaagattatcaaa
tctatgggtttcgccggttacttcctgattgtttccgatttcgtttcctacgcgaaaagg
atgaacatccccgtcggtcccggacgtggttcagcagccggcagtcttgttgcttacgcc
ttaactattaccgacatcgatccaattcgctacgacctttttttcgaacgatttctgaac
cctgaccgaatcagcatgcctgatatcgatattgatttctgccccgaggggcgcggcgat
attattcgctatgtgacggaaaagtatggagaagacaaagtctctcagatcatcaccttc
ggtaaaatgcaggcccgtgcagtcattcgtgacgtgggaagggcgctgaacattccttat
ggtgaagtggattccattgccaaactcgtgcccaacatactgaatatatctctcgatgat
gctatggagatggagcctcgccttcaggaggctgctaagcgcgatgaaaaaattcggaaa
ctgttgaagctttcaaaatcactggaaggattaaaccgccatgcctctgtgcatgcggcc
ggagtcgtgatctcggatgtgccgcttgtggaaagagttccgctttataaaagcccgaaa
gatgatgtgacgacgcagttttccatgaatgatctgtcaaccgtgggtttgaccaagttc
gattttctgggcctgaaaacgctcacagttataaaaaacgcgctttcgttcattaaggag
ggtcttggaacagatcttgacttgaaaaatctgccactgaatgatgccgataccttcaaa
ctgctcagcaagggcgaaacagatggagtttttcaacttgaaagtgacggaatgaaggaa
attctcgtccgtatgaaaccggattgcatcgaagatctgattgcattgatcgccctttac
cgtcccggtcccatgaatatgattcctgaatttatcgccaggaaacaagggaaaaccccg
atcatctacgaaattgaccagttggaaggcatactgaaagaaacatacggcgttattctt
tatcaggaacaggtcatgcagatcgcaagtgttattgctcaatattcgatgtctgaagcg
gacacgctccgtaaggtgatgggcaaaaaagacacggccaagatggagacggaacgcccc
aaatttatggagggggcaaaggccaacggcattccggagcagaaaaccaggaagatctgg
gagcaaatggaaacctttgcttcctacgggttcaataagtcgcacagcacggcctatgct
atggttacttatcagaccgcctatctcaaggcgcactaccccgttgaatttatggctgcg
ctgctgaccagtgaaaaagacaacagggacaaaatcatcaaatatattcatgtctgcaag
gaaatggggattgcgattcttcctccggatattaatgaatctcagcgggatttcagcgta
gctggaaaccgcattcgcttcgggctcgcggccatcaaaaatgttggactgggtgcgatc
gatgccatgatctcttcacggcagaaaggaggagaatttttatcctttgaagatttctgt
aatcggaccgaccttaagaaggtaaacaagcgcgttctcgaaagtctgatcaagtgtggc
gcttttgattcgacaggacagaggcggcggcaactgatgtcggaatatgagaacatcatc
gagatttctcaaaagcgtcagaaggacaaggccagcaaacaggccagtttttttgacgat
atggaagacttgggagttgaggaaaagagatcctatgccaactcctctgcggctgaaatt
caggaatgggaccctaaagaattacttgcccatgaaaaggaatttctcggattttatgtt
acaggccatccgcttgagggttatgcgtccaaaatcagcatggtagccaatacggactca
gccggcattctggaaaagggtgacaaggaaccggtttccctggcgggtattgtgtccgga
atacgggaagtctttacgcggaaaaaagaaatcatggcctatgtatcccttgaagacctc
aaaggagcgacggatgtaatcttttttcctgaaatttataaaaaagtgacggatatcctt
cacggtgatgccccgatttttgtaaaaggcatactagatgtagcggaagaaaatgtgaaa
gtaatcgccgaagaagcctcgcttttatctgaaacggaatacaatcctttttcaagcgtc
catttcatggtggacatcgaaaataacggtacctcagatcatcttgtcgacaggctgcat
cagttaaccaaaaattataaaggaaaatatgacgcatatcttcatctcatcaatggctcc
tgtgaaacaaagatctatctcggtgacaaggcaaagttatccatcagcccggaattaaag
agagaagccaatataattcttggagaaggggtgatgattttcatgtaa
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