Syntrophus aciditrophicus: SYN_01298
Help
Entry
SYN_01298 CDS
T00346
Name
(GenBank) superfamily II DNA and RNA helicases
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYN_01298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sat03019
]
SYN_01298
03009 Ribosome biogenesis [BR:
sat03009
]
SYN_01298
Enzymes [BR:
sat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SYN_01298
Messenger RNA biogenesis [BR:
sat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SYN_01298
Ribosome biogenesis [BR:
sat03009
]
Prokaryotic type
rRNA helicases
SYN_01298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABC78987
UniProt:
Q2LY23
LinkDB
All DBs
Position
3116599..3118317
Genome browser
AA seq
572 aa
AA seq
DB search
MKTFAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIP
LIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEELR
KGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNT
LLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALRRIADMN
PELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVATD
VAARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAIERC
LKKNFEEGRIPSGHEICKRRLLSHMEAVKKTEIDAEHIDPFLPAISKTLESLDREELIKR
FVSMEFNRFLASYRNAPDLNTFEKTPPKKKTREAAAGKPYRLASRKKFTPLFINAGKKDG
ISPKRLMRDLSDAAGMPDVRIGRIEVNNTTSLLEADSRFAPKILQALKSLTINGRYVAVE
IDRKTAIRNRPENRRYDSSTAKDRRKGQSRPA
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacatttgccgaatttgagattaacacggatattatgaaaggacttgacggactc
ggcttttccgttatgactcccgtacaggagaagattattcctattgttctgaaccgtcag
accgaccttgttggtctcgcacaaaccggaacggggaaaacggcggcatttggcatcccc
ctgatccaattgactgatacccggctgaagcggactcaggctctggttctctgcccgact
cgggagctttgcgttcaggtggccggcgatctcaacctgatgggtcgatatgtacagaaa
ttaaagattgtgccggtttacggcggggcgagcatcgtcagccagacagaggaactgcgg
aaaggggctcaggttgtcgtggcgaccccggggcgtctgcatgatctgatccgtcgggga
gcggtcgatctctccggcgtctcctgggtcgttctcgatgaagcagacgaaatgctgcag
atgggtttccaggacgaactgaacgccattctagccgtaaccccggattccaaaaacacc
ctgcttttttcagcaaccatgccgcgggaagtagcggcaatcgctgccaactacatgaag
gatccgctggaaatcatcgttgggcgacgcaatgccggagcggaaaacgttgatcacatc
tattatgtcgtttcagccaggcaccgctatcaggctttgaggcgaattgcggatatgaac
ccggaactctatgccatcattttctgccggacccgtctggaaaccagagagatcgtcgat
aagttgatcgaggatggctacagcgccgacgcccttcacggagatctctcccagagccag
agagaccacgtgatgcataaattccggagcaggaacatccggatgctcgtggccaccgat
gtcgcggcccggggcctggatgtcaatgatctgacccacgtgatcaattacagcctcccg
gaggaatcttccggctacacgcaccggagcggccgtacggggcgtgcgggaaagaaggga
atttccatagccttaatcgaaactcgagaaaagcataagattcgagcaatcgaacgatgc
cttaaaaagaattttgaagaaggccgtattccttcaggccatgagatctgtaaacggcgc
ctgctcagccacatggaagccgttaaaaagacggagatcgatgcggaacatattgatccg
tttctgcccgctatctcgaaaacactggaaagcctggatcgggaagagctgatcaaacgg
ttcgtatcgatggaattcaatcggttcctggcgtcttaccggaatgccccggacctgaac
acctttgaaaaaacccctccgaaaaaaaagacgcgggaagctgctgccggaaagccttat
cggctggcttcccggaagaaatttacccctttgttcattaatgccgggaaaaaggatgga
atcagtccgaaacgtctgatgcgcgatctttcggacgccgcaggcatgccggacgtccgg
atcggcagaattgaagtcaacaacaccacctcgcttctggaagcggacagccgctttgcg
ccgaaaatattgcaggcattgaagtccctgacgatcaacgggcgatatgttgccgtcgag
atcgaccggaaaaccgccatccgaaaccggcccgaaaatcggcgttatgattcgagcacg
gcgaaggatagaagaaaaggtcagagcagaccagcctaa
DBGET
integrated database retrieval system
