Syntrophus aciditrophicus: SYN_01780
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Entry
SYN_01780 CDS
T00346
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYN_01780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sat03019
]
SYN_01780
03016 Transfer RNA biogenesis [BR:
sat03016
]
SYN_01780
Enzymes [BR:
sat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SYN_01780
Messenger RNA biogenesis [BR:
sat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SYN_01780
Transfer RNA biogenesis [BR:
sat03016
]
Prokaryotic type
tRNA degradation factors
SYN_01780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
S1_2
KH_NusA_2nd
aRib
S1_RRP5
DUF5813
Motif
Other DBs
NCBI-ProteinID:
ABC78548
UniProt:
Q2LWT4
LinkDB
All DBs
Position
complement(2692330..2694447)
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AA seq
705 aa
AA seq
DB search
MSTIFSAEFAGRNISIKTGYVAGQADGAVMVIYGDTVVMVTAVSLKTAREGVDFLPLTVD
YQEMTYAAGKIPGGFFKREGRPNEREILTSRVIDRSIRPLFPKGYCYETQLVATVLSVDS
ENDSDVAALLAASAALEISDIPFKGPIVGVRVGRVDGQFICNPSKLEQEKGDLNLYLVGR
KVVPGTEGRPYDVNLVMLEGEAQQVEEEHVIAGIDFGLECMRPVIELQDQLRSALGKPKR
EFEAVEIDDALLAEVSEKAAVRMREAYRMSRKLDRHAALDEIRNSVLKAVTADEAGLRLR
TAAALEALEKRIVRDVILKEKQRIDGRSYAEIRAISAEVGILPRAHGSALFNRGETQSLA
ALALGTSSDEQRLDYVAGEETRSFILHYNFPPYCVGEARPLRSPGRREIGHGNLARKALM
PVIPSPEEFPYTIRIVSEILSSNGSSSMATVCGGLLCLMDGGVPVKGVVAGIAMGLLKEG
EQVVILSDILGDEDHAGDMDFKVCGTSKGITAMQMDIKIDGINEDILRKALAQAREGRLF
IIDKILATISEPRKELSIYAPRITTVKVKPEKVRAVIGTGGKNIRQIVSETGVTIDVEDD
GTVTIASSDMEASARAIAMVRWLTEDAEVGKIYRGTVKKVVDFGAFVEILPGTEGLLHIS
QLAKERVNKVTDIVNEGDEVIVKVLEVDKQGKIRLSRKEALGSDI
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaatattcagtgcggagtttgccggaaggaatatatccatcaagacagggtat
gttgctggtcaggcagatggcgcggttatggtgatttatggggataccgttgtcatggtg
acggcggtttctctgaagacggcccgggagggtgtggattttctgcctttgacggtggat
tatcaggaaatgacttatgccgcgggcaaaatccccggcgggtttttcaagcgggaagga
cgaccgaatgaacgcgagattctgacatcgcgggtcatcgatcgttccatccgtcctttg
ttccccaaggggtactgctatgaaacccaactcgtggccaccgtactgtccgtagacagt
gagaatgattccgatgttgccgcccttctggccgcatcggcggctctcgagatctccgac
attccgttcaaggggccgattgtcggcgtccgggtcgggcgggttgacggtcaattcatc
tgcaatccctcgaaattagagcaggaaaaaggagatctgaatctttatcttgtcggcagg
aaagtggttccggggacggaaggcaggccctatgatgtcaacctcgtcatgctggaggga
gaagctcagcaggtcgaggaagaacacgtcatcgccgggatcgacttcggtctggaatgc
atgcgtcccgttatcgaattgcaggaccagctccgctcggcccttgggaaacccaaacgg
gagttcgaggccgttgaaattgacgacgctctgctggcggaggtttcggaaaaggcggcg
gtcaggatgcgcgaggcgtaccggatgtcgagaaaactggatcggcatgccgccctcgac
gagatccgcaattccgttctcaaggccgtcacggctgatgaagccggactgcgtctccgg
acggcggcggcattggaagctttggaaaagcgcattgtccgggatgtgattctgaaagaa
aaacagcggatcgatggacgatcctatgcggagatacgcgccatcagcgcggaagtgggg
atccttccccgggcgcacggttccgcccttttcaatcgcggggaaacccagtctcttgcc
gctctcgccctgggaacgtcatcggacgaacagcggctggactatgttgcgggtgaagag
acgcgttccttcattcttcactacaattttcctccctactgcgtcggtgaagccaggccg
ttgcgaagccctggccgccgggaaatcgggcatggcaatctggccagaaaagccctgatg
ccggtgattccttctccggaagaatttccctatacaatccgaattgtttccgagatcctt
tcctcgaacggttcctcatccatggccacggtctgcggaggcctcctctgtctcatggat
ggcggcgttccggtcaagggggtggtggcggggattgccatgggccttctgaaagagggt
gagcaggtggtgattctgtccgacatccttggtgatgaagatcatgccggggatatggat
ttcaaggtctgcggaaccagtaagggtattaccgccatgcagatggatatcaagatagac
gggattaatgaggatattctccgcaaggcgctcgcgcaggccagagaagggaggctgttt
atcatcgacaagattctggctacgatttccgaacccaggaaggaattgtctatttacgct
ccccggatcactacggtgaaagtcaaaccggaaaaggtgcgcgccgtgatcggtaccggc
ggcaagaatatccgccagatcgtcagcgagaccggtgtaaccattgacgtggaagatgac
ggcacggtgacgattgcgtccagcgatatggaggcgtccgctcgggcgattgccatggtc
cgctggttgacggaagacgccgaagtgggcaaaatctatcggggaaccgtcaagaaggtc
gttgatttcggggcgtttgtggagatcctgcccggaaccgaggggctgcttcacatctcg
cagctggccaaagagcgggtcaacaaggtgacggatatcgtcaatgaaggcgatgaagtc
atcgtgaaggtccttgaagtggacaagcagggtaaaattcgattgagtcgaaaggaagcc
ctgggttccgacatttaa
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