Syntrophus aciditrophicus: SYN_01798
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Entry
SYN_01798 CDS
T00346
Name
(GenBank) transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYN_01798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sat03021
]
SYN_01798
03019 Messenger RNA biogenesis [BR:
sat03019
]
SYN_01798
Transcription machinery [BR:
sat03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SYN_01798
Messenger RNA biogenesis [BR:
sat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SYN_01798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
Spore_III_AA
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
Fungal_virus_P2_C
NACHT
AAA_14
AAA
DUF6115
Motif
Other DBs
NCBI-ProteinID:
ABC78563
UniProt:
Q2LWV6
LinkDB
All DBs
Position
complement(2708199..2709446)
Genome browser
AA seq
415 aa
AA seq
DB search
MNIEEIKRQPINELAHLAKDLNVPGAGGMRRQDLIFAILQAQAEKNGMISGSGVLEILPD
GFGFLRAVDYNYLPSPDDIYISPSQIRRFNLRTGDTISGEVRPPKEGEKYFALLKVDTIN
FEASELARDKILFDNLIPVYPHDKLNLESNPENYSTRIMDLFTPIGKGQRGLIVSPPRAG
KTVLLQDIAHSITANHKEVILMVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPPSGKVLSGGVDSNALHKPKRFFGA
ARNIENGGSLTIISTALIDTGSRMDEVIFEEFKGTGNMELHLDRRIADRRVFPAFDLIRS
GTRKEELLTPKENLNRIWILRRILQEMNPVDAMEFIIDKMRKTETNQAFLDSMNQ
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgaagagattaaaagacagcccattaacgaactggctcatctcgcgaaagat
ctgaatgtgccgggcgcggggggaatgagaaggcaggatctgattttcgcgattcttcag
gctcaggcggagaaaaacgggatgatctcggggtcgggcgtactggagattcttcccgat
ggctttgggttcctgagggccgtggattacaattatctgcccagccccgatgatatctac
atttctccttctcaaatccggcggtttaatctccggaccggggacacgatttccggggag
gtcaggccaccgaaggaaggggaaaagtatttcgctctcctcaaagtcgacaccatcaac
tttgaagcttccgaactggcccgcgataaaatcctgttcgataatctcattcctgtttat
ccccatgataaactgaacctggaaagcaatccggaaaactactcgacacggatcatggat
ctcttcacacccatcggcaagggtcagcgggggctgatcgtttcgcctccccgggctggc
aagaccgttcttcttcaggacattgcccacagcatcacggcaaatcataaagaggtcatt
ctcatggtgctgctcatcgatgagcggccggaagaagtgaccgacatgcagcgcagcgtc
aagggagaagtcgtttcctccaccttcgacgagccggcaacccgtcatgtccaggttgcc
gagatggtcatcgagaaggcgaaaaggctggtcgagcacaaacgggatgtggtcatcctc
ctggacagcatcactcggctggccagggcgtacaacaccgttgtacctcccagcggcaag
gtgctgtccggcggtgtggattccaatgcgcttcataaaccgaagcgttttttcggggct
gcccggaacatcgaaaacggcggcagtctgaccattatttccacggcgctgatcgacacc
ggcagccgcatggacgaggtgatcttcgaagaatttaaagggacgggtaacatggaactt
catctggatcgacggatagcggaccggagggttttccccgccttcgatctgatccgttcc
gggacccgcaaagaggagctcctcaccccgaaggagaatctcaacaggatatggattctg
cggagaattctccaggaaatgaatccggtggacgccatggaattcattatcgacaagatg
cgcaagaccgagaccaaccaggcctttctggattccatgaatcagtag
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