Syntrophus aciditrophicus: SYN_02029
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Entry
SYN_02029 CDS
T00346
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sat
Syntrophus aciditrophicus
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sat03016
]
SYN_02029
Enzymes [BR:
sat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SYN_02029
Transfer RNA biogenesis [BR:
sat03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SYN_02029
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Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
DUF5580_M
Motif
Other DBs
NCBI-ProteinID:
ABC76222
UniProt:
Q2LPL4
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All DBs
Position
complement(342615..343202)
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AA seq
195 aa
AA seq
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MTEFEPIRAFLAIEPPEAVRQAMAAVQNRLKYCMSGAISWVRPEGIHLTLKFFGNIAETD
VDRISAAVGPVASRFAPLDLQVRQVGLFPDFRRPRVVWMGLEGDISALKALQQEVDKQLA
RYGFHREDRDFRAHLTLARIKSSRGLSGLDRVMKKSDGYEAGRFRAAGLTLFRSDLTPQG
AIYSKLAGYPFQSGE
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaatttgagcccatccgggcctttctggccattgaaccgccggaggccgtgcgg
caggccatggccgccgtgcagaaccggttgaaatattgcatgagcggcgccatcagttgg
gtccgtccggaaggcatccatctgactctgaaatttttcggcaacatcgccgaaacggat
gtcgaccggatcagcgccgccgtcggacccgtcgcgtcccgctttgcacccttggatctg
caggtgcggcaggtcgggctgtttccggatttccgacgcccgcgcgttgtctggatgggt
ctggagggggacatcagtgcgctgaaagccttgcagcaagaggtcgataagcaactggcg
cgctacggattccaccgcgaggatcgtgacttccgcgcccatctgacgctggctcggatc
aaatccagccgggggttatccggccttgaccgggtgatgaaaaaaagcgatggatatgaa
gcgggccgtttccgggctgcaggactgacacttttccgcagtgatctgacgcctcagggg
gccatttacagcaagctggccggctaccccttccaaagcggcgaataa
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