Syntrophus aciditrophicus: SYN_02430
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Entry
SYN_02430 CDS
T00346
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYN_02430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sat03019
]
SYN_02430
Enzymes [BR:
sat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SYN_02430
Messenger RNA biogenesis [BR:
sat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SYN_02430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Flavi_DEAD
HypF_C_2
Motif
Other DBs
NCBI-ProteinID:
ABC78726
UniProt:
Q2LXB6
LinkDB
All DBs
Position
2870357..2871628
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AA seq
423 aa
AA seq
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MSFTQFNLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPIL
QRLMNGPGKMVRALIVAPTRELAEQINESINEMSRSTKLKSVALYGGVSKNPQIEKLRQG
AEIIVACPGRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRKITKQLPEKRQTLL
FSATMPADIRSLAKDILHDPLTIRIGNDIPVSTVSHTLYPVEQHLKTALLIKLLKETDTE
SVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKYRILIATDIAA
RGIDVTRISHVINYDMPDTVEAYTHRIGRTGRATKSGDAFSFVTSEERDLVDSIEYVLGK
QIARCTLEDFDYSRPAPAGSGRVRHPMRMPAISELPTRFRSSTPVKKTASYHMSPGASGR
RSR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagttttactcaatttaatcttcacccgcagatcaatgccggtatcgaggccctgggc
tataaaacgccgacaccaattcagatgcaatccattcccgcgattatccagggaagggat
gttatggggcttgcacagaccggaacggggaaaacagctgcctttgcacttccgattttg
caacggctgatgaacggtcccggcaaaatggttcgcgccctgattgtcgcaccgacgcgg
gagttagctgaacagataaatgaatccattaatgaaatgagtcggtcaacgaaattgaag
agcgttgctctttacgggggggtgagcaagaatccccagatcgagaaactccggcaaggg
gccgaaattatcgtcgcctgtccgggtcgtcttcttgatcttgtggcccaaggcgttgcc
gacttgtctggaatcgaagttttcgttttggatgaagcggaccggatgtttgatatgggt
ttccttcctgagatccggaaaatcacaaagcagctgcccgaaaagcggcagacgctgctt
ttctctgccaccatgccggccgacatccgcagcctggcaaaggatatcctgcacgaccct
ctaaccatcaggattggcaacgatattcctgtctctacggtttcccacactctttatccc
gttgaacagcatctcaaaacggcgcttctgataaagcttctcaaggaaacagacactgag
tcagtcctcgtcttcgcgcggacgaagcatcgtacaacgcgggtggccatgcagatgaaa
aaagccggtttccccgtgagttccctccagggagatctgtcgcagaatcaacgtcagaca
gcactgaatgggttccgggaagggaagtatcggattttgatcgctacggacatcgcggct
cgcgggatcgatgtgacccgcatttctcacgtgatcaattatgacatgcccgacactgtc
gaggcttacacacatcggatcgggcgcactggtcgtgcgacaaagtcaggggacgccttt
tcgtttgtaacctcagaggaaagggatttggtggattccatcgagtatgtgcttggaaaa
cagatcgcaaggtgtacccttgaggatttcgattactcaagaccggctcctgctggaagt
ggcagggtccgccatcccatgcgaatgccggcaataagcgaactcccgacacggtttcgt
agttcaaccccggtaaagaaaactgcatcttatcacatgagccctggagcttccggccgc
cgaagccgttag
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