Syntrophus aciditrophicus: SYN_02552
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Entry
SYN_02552 CDS
T00346
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SYN_02552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sat03400
]
SYN_02552
Enzymes [BR:
sat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SYN_02552
DNA repair and recombination proteins [BR:
sat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SYN_02552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_30
AAA_12
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABC77337
UniProt:
Q2LTC8
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All DBs
Position
1489190..1492882
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AA seq
1230 aa
AA seq
DB search
MKPFDLLNAPLQGRNLIEANAGTGKTYAISGLFLRLIVEHALQVGEILVMTYTVAATEEL
KDRIRCTLSRALEALGHGRVEDLFLDSFVRRLAEDDRTNSARRRLATALRDFDEAAIFTI
HGFCQRTLQENAFESHSTFNAELITESEKITDLILQDFWRRHFYEAQPELVAYALETKNN
LAGYRSFLRQISSHPDIRIVLEPPAPNHDIVEEEIAAYRREISKLRDSWKECRETVCSLL
RDGSLNGKVYGEYQTDRYVDELDVFLERGGPCFPLPKNFEKFTAGKLSRSCRKGCVPPKH
HFFEICQVINDLEKRLKVVLDSILLSLKKELLQTIHAELPAFKTRRNILFFDDLLLRLRD
ALGRPEGDLLAAAIRRKYRAALIDEFQDTDPVQYAILQAAFLCNRPEESDKPPIFLIGDP
KQAIYSFRGADIFAYMAAAKQVDAAYTLQENWRSAPALLNAVNSVFHSHPNPFVYEAISF
MDSKPAPGGQKEQLILAGPDEWDPAPLQLWVIPDHQKGGKVKPLGKGHATPGILQAVTAE
ISHLLDAGRKGMALIGNRRIEAGDVAVLVRSNREARLIQQALLEGSIPAVMHSRDNLFDS
LEATDMDLLLRAIEVPNDERRLGAAMMTSLLGLSIGALYRLKIDERQWENCLQRFRNYHR
QWQEAGFMRMMRSLLRIEDIRSRLLSQPDGERRLTNVLHLAEVLHRESLERNRGMRGLIR
WLAEQRDPGKMRSDEHQLRLESDARAVRIVTIHKSKGLEYPVVFCPFVWEGAKDVSKNDA
LTCHGGDENSFLLCDLGLPHQALHELRAYREGLAERVRLLYVALTRAKHRCYLVWGHFNG
AGGSAPAYLFHDRTSKWDENNPEEAIAAAASFRNFYNELTGPEILRDLDRIADSAHGSIS
IADLPVPTAVTPLPNEHWKGTLSRRNFTRKLEQSWRFTSFSSLVFGTYVPQEGADRDREE
EYRPLKSSDWQVLPPGTQTGNLLHEFLEQLDFKERDEMVLQQRASEALSSHGFDSRWKTA
LLTLIRNVLALSLSGGGNGQSFRLSDICCGDRISELAFYFPLKRLTRDNLRILFQEISRE
DPGMVPDSWDLEMERLSFSSVRGWLRGFIDLVFVIDGRYYLLDWKSNFLGADPSGYSPEA
LKSVMVRKHYILQYHLYALALHAYLKQRLPGYRVERHFGGIYYLFLRGIDPSRGEKTGVY
FDRPSEARLTALYDGLIEKNPAERRNADVA
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttttgacctcctcaacgcgccccttcagggacgaaacctgattgaagccaat
gcgggcactggaaaaacctacgccatcagcggactctttcttcgcctgattgtggagcat
gccctgcaggtcggggagattctcgtcatgacctacaccgtggcggcgacggaggaactg
aaagacagaatccgctgcacactcagccgggctttggaggccctcgggcatggaagggtt
gaagacctctttctggactcatttgtccgtcgtctggcggaggatgatcgcacgaattcc
gcacggcggcgtttggcgacggcgctgcgggatttcgacgaggcggccatttttaccatt
catggtttctgtcagcggacgcttcaggaaaacgcttttgaaagtcattcaaccttcaat
gccgaactgatcaccgagtcggaaaaaataacggatttgattctccaggatttctggcgg
cgtcacttttacgaagcgcagccggaactggtcgcctacgcgcttgaaacaaaaaataac
ctggcgggataccgctcttttctgaggcagatttccagccatccggatattcgaatcgtt
ctggagccgccagccccgaaccatgatatcgtggaagaagaaatcgccgcttatcgccgg
gagatcagcaaattgcgggactcatggaaagagtgccgcgaaaccgtttgcagcctcctc
agggatggttcgctaaacggcaaagtatacggggaatatcaaacggatcgctatgtcgat
gaactggatgtttttctggaaagaggggggccctgctttcccctgccgaaaaacttcgaa
aaatttactgcaggcaaactgtccagatcgtgccggaaaggctgtgtgcctccaaaacat
cactttttcgaaatttgccaagtaattaatgacttggagaaaagacttaaagttgtactt
gacagtattcttctatcgctgaagaaagaacttctgcagactatccacgctgaactgccc
gcttttaaaacccggcggaatatcctctttttcgacgaccttctcctgcgcctgcgggat
gccctcggacggccggaaggcgatctcctggcggcggctatccggagaaaataccgggct
gccctgatagatgaatttcaggatacggaccccgtgcagtatgccattctgcaagcggct
tttctgtgcaaccgccctgaggagtcagataaaccgccgatatttctcataggtgatcca
aaacaggcgatatacagtttccggggcgcggacatttttgcctacatggcagcggcgaaa
caggtggatgcagcatatacccttcaggagaactggcgttctgcgcctgcgcttctcaat
gctgtcaacagcgtgtttcacagtcatccaaatcctttcgtttacgaggccatttccttt
atggattcaaaaccggctccgggagggcagaaagaacagttgatccttgccggacccgac
gaatgggatccggcgcctcttcaactctgggttattcctgatcatcaaaagggcggaaag
gtgaagccgttgggaaaaggccatgcgacccccgggattctccaggccgttacagcggag
atcagtcacctgctggatgcaggaaggaaggggatggccctgattggcaaccggagaata
gaagccggggatgtggccgttctcgtccggtccaatcgggaggcccggcttattcagcag
gcccttttggaaggatcgataccggctgttatgcatagtcgggataatctgtttgactcg
ctggaggcaacggatatggatctgcttctccgagcgattgaagttcccaacgacgagcgt
cgtcttggagcggccatgatgacttccctcctggggttgagcattggcgctctttaccgc
ctcaaaatcgatgaaagacaatgggaaaactgccttcaacgtttccgcaattatcacaga
caatggcaggaagcaggcttcatgcggatgatgcgttctctgctgcggattgaagatata
cgttcccgtcttttgtcgcaacccgacggagaacggaggctgaccaacgttcttcacctc
gcggaagtcctgcaccgtgagagtctggagagaaaccgcgggatgcggggcctcatccgg
tggctggcagagcagcgcgatccgggaaagatgcgatccgatgaacatcagctccggctt
gaaagtgatgcccgcgctgtgaggattgtgaccatccataaaagcaagggactggaatat
cccgttgtattctgtccctttgtctgggagggcgcaaaggatgtttctaaaaatgatgct
ctcacctgccatggtggggatgaaaacagctttctcctctgtgatctgggccttcctcac
caggctctccatgaactgcgggcttaccgggaagggcttgcggagcgtgtccgtctcctc
tatgtcgcactgacccgtgccaaacatcgctgctatcttgtttggggccatttcaacgga
gcgggaggctccgccccggcctatctcttccacgacaggacttcaaagtgggatgagaat
aatccggaagaagccattgccgcggctgcatcattccggaatttctataatgaacttaca
ggaccggaaattcttcgggatctggatcggatagcggattccgctcatggatcgatttcg
attgccgatctgcctgttccgactgcggtcactccccttccgaatgagcactggaaaggg
actctttcacgcaggaattttacgcggaagctggaacagtcctggcggttcaccagtttt
tcctccctggtattcggtacctatgttcctcaggaaggagccgatcgggatagggaagag
gagtatcggccgctgaaatcttcagactggcaggtcctccctccgggaactcagacggga
aatcttcttcatgagttcctggaacagcttgattttaaggaaagggacgaaatggttctc
cagcagcgggcatcagaggcgttatcttctcacggattcgattcccgctggaagacggcc
ctgctgacgcttatcaggaatgtccttgccctgtcgctatcggggggaggaaatgggcaa
tcctttcgtttatcagacatttgttgtggggatcggatcagtgaactggcattttatttt
cctctgaagcggctgacccgggataacctgcgcatcctctttcaggagatcagccgggaa
gaccccgggatggttcccgattcatgggacctggaaatggaacgcctctccttcagctcg
gtccgggggtggttgaggggcttcatcgatctcgtttttgtcatcgatggccgatattac
cttctggactggaagtccaattttcttggcgccgacccatccggctattctccggaagcc
ctgaaaagcgtcatggtccggaagcattacatccttcagtatcatctctatgccctggcc
ctgcatgcctatttgaaacagcgtcttcccggataccgcgtggaaaggcatttcggcggg
atttattatctatttcttcggggcatcgatccaagccggggagaaaaaacgggcgtttat
ttcgatcggccgtcagaggcgcggctgactgcgctgtatgacggacttattgaaaagaat
cctgcggaaaggagaaatgccgatgttgcctga
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