Syntrophus aciditrophicus: SYN_02584
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Entry
SYN_02584 CDS
T00346
Name
(GenBank) superfamily II DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYN_02584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sat03019
]
SYN_02584
03400 DNA repair and recombination proteins [BR:
sat03400
]
SYN_02584
Enzymes [BR:
sat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SYN_02584
Messenger RNA biogenesis [BR:
sat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SYN_02584
DNA repair and recombination proteins [BR:
sat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SYN_02584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABC76098
UniProt:
Q2LQI6
LinkDB
All DBs
Position
complement(225666..227525)
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AA seq
619 aa
AA seq
DB search
MIQTPLESLKKIFGYDAFRLHQQEIVDGLIRGEDAFVLMPTGGGKSLCYQLPALHRPGVG
IVVSPLISLMKDQVDSLKAYGVKAAFYNSSLSGTEARKVLARLHGGKLDLIYIAPERLMS
REFLERLNDIPIALFAIDEAHCISQWGHDFRPEYRQLGRLRGLFPEIPLIALTATAEAHT
RRDILERLGLRQARSYISGFDRPNIRYTVLEKRKPFAQLTTFLQPRYKGTGIVYCLSRQR
VEKVAGALTEAGFQAAPYHAGLPAGARKQVQEDFLRDDIRIIVATVAFGMGIDKSNIRWV
VHYDIPKNIESYYQETGRAGRDGLPAEALLLFGYGDISLARGLIENSKNPERRRIELHKL
NAMVGYAEALSCRRRILLGYFGESLAEDCGNCDICLNPPRLVDVTEDSRKALSCVYRVGQ
RFGMGHVIDVLRGSQKERVLELHHDRLSTYGIGRNRSQEYWGSLLHHLVHNGFLEQDVGN
YSVLKLTDAARPLLRGEQTLSMAEPRVKTETASLTHRRKGGQKARDEYPDDSAALFERLR
TLRKKLADMAGVPPYIIFSDASLAQMAAFLPADPEAFQQIHGVGAHKTARYGPDFLEEIR
RFIDSSVEKKKNRTQGLPG
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgattcaaaccccacttgaaagcctgaaaaaaatcttcgggtacgacgcgttccgactg
caccagcaggagattgtcgacgggcttatccgtggcgaggacgcctttgtcctgatgccc
acaggcggcggcaaatccctttgttatcagcttccggccctccatcgtccgggggtgggg
atcgtggtttctccgctgatttccctgatgaaggatcaggtggattcccttaaggcctat
ggtgtgaaagcggcattctacaattcctctctaagcggcacggaagcacgcaaagtcctg
gcccgactccacggcgggaagttagatctcatctatatcgccccggagcgcttgatgagc
cgggagtttctcgaacggctcaacgacatccccatcgctctgttcgctattgacgaagcg
cattgcatttcccagtgggggcacgacttccgtccggaataccggcagttgggccggctt
cggggccttttccctgaaattcccctgatcgccctgaccgccacggccgaggcgcacacc
cgccgggatattctggagcgcctgggcctccggcaggccagatcctacatctctggattc
gaccggcccaatatccgctataccgttcttgaaaaaagaaagcctttcgcgcagttgacg
acctttttacaaccgcggtataaggggaccggcatcgtttactgcctgagccgccagcgg
gtggaaaaggtggccggagcacttaccgaagccggcttccaggcggctccctaccacgcg
gggctcccggcgggagcgcggaagcaggtgcaggaggattttctgcgcgatgatatccgg
atcatcgtggccacagtggccttcggcatgggaattgacaagtccaacatccgctgggtg
gtccattacgacataccgaaaaatattgaaagctattaccaggaaacggggcgagccggc
cgtgacggccttccggctgaggctctgctgctcttcggctatggcgatatttccctggcc
cgcggtctgatcgagaactcaaaaaatcccgaacgcagacggatcgaacttcacaaactc
aatgccatggtgggatatgccgaagccctgagctgccgccgccgtatcctgctgggttat
ttcggggaatccctcgcggaggattgcggcaactgcgatatctgccttaacccaccgcga
ctggtcgatgtgacggaagactcccgcaaggccctgtcctgcgtctatcgggtgggacag
cgcttcggcatgggtcacgtcatcgatgtgctgcgcggatcgcaaaaggagcgcgtgctt
gaacttcaccatgaccgattgtcaacctatgggatcggccggaacaggagccaggaatac
tggggcagcctgctccatcatctggttcacaatggcttcctggaacaggatgtgggcaat
tattcggtgctcaaactcacggacgccgcccgaccgctgctgcgcggggaacagaccttg
tccatggcggaaccacgcgtgaaaacggagacagcgtctcttacacataggcgcaagggc
gggcaaaaagcgagagatgaatatcccgacgactccgcagccctgttcgaaaggctgcgc
actttgcgcaagaaactggccgacatggccggcgttccgccctatatcattttcagcgac
gcctccctggcgcagatggcagccttcctgcccgccgatcccgaggcttttcagcaaatc
cacggcgtcggcgcgcacaagacggcacgctacgggccggatttcctggaggagatccgg
cgatttatcgacagctctgtggaaaaaaagaagaacaggacacagggtttgccgggctga
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