Syntrophus aciditrophicus: SYN_02956
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Entry
SYN_02956 CDS
T00346
Name
(GenBank) transcriptional regulator containing sigma 54 interaction domain
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
sat
Syntrophus aciditrophicus
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sat03000
]
SYN_02956
Transcription factors [BR:
sat03000
]
Prokaryotic type
Helix-turn-helix
Other families
SYN_02956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
PAS_3
PAS
AAA_5
AAA_2
PAS_4
HTH_8
AAA
AAA_7
PAS_9
AAA_22
MCM
AAA_16
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ABC76635
UniProt:
Q2LRC8
LinkDB
All DBs
Position
766633..768726
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AA seq
697 aa
AA seq
DB search
MPNFRHGSLYPRAAMLCRERPQSAEPGGRVRTLTDTGERLNSEIARRKRAERTLRDRLLF
EEMLSVISAGFINLSFERIDEEIHHAMKKVLNFFKVDRFALLETLPDRKSWMITHCVSGT
DVPSVPVGENLPVSLHPWAYEKLIQKREVLSFSKIDDLPAEADVDKENWIVWGIRSNLNI
PIRIGKPVDHIVAINSVKYERVWPDELIPRLRLLGEIFVNALERSRAWKALQESEERLNL
ATVAAGAGLWILDTNTGQFWVTQMLRKLFNFLPGEELSFERYEKTIHPDDRKGVRELVQR
SLKTQNDLTIEYRILKPDGNVCWIMTRGRPYGGATGIPLRLMGICMDITERKEMENELRK
QLAEINKLKLQLEKENIYLRNEIKTERGFGGIIGHSDTLRYVLFRVQQVAPTDATVLILG
ETGVGKGMVAHAIHEMSARKDKTMVTVNCAALPSNLIESELFGREKGAFTGAYARQAGRF
EVADGGTIFLDEIGELPLELQTKLLRVLQDGEFERLGSPRTVKVDVRVIASTSRDLKVEM
HNGRFREDLYYRLNTFPVTLPPLRMRVEDIPELARHFIDKYSRKLNKQFESLSKDTMQML
QAYAWPGNVRELEHVIERGVITSPEPVFQLVEQLEQGPGMEADKPIKGFETMAREHILQV
LHKTGWKIEGKGGAAAILGLNPSTLRFRLKKLGIKRP
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
ttgccgaacttccggcatggtagtttatatccacgggccgcgatgttgtgtcgagaaagg
cctcaaagcgcggaaccaggggggagagtgcgaacgcttacggataccggcgaacgactg
aacagtgagatcgcaaggcggaagcgggccgagcgaaccctgagagatcgcttgctcttc
gaggaaatgctttccgtaatttccgcaggattcatcaatttgtctttcgagcggattgat
gaggaaatccatcatgcaatgaagaaagttctgaacttcttcaaagtagatcggttcgcc
cttcttgaaacgttaccggacagaaaatcatggatgatcactcattgtgtatccggcaca
gatgtgccttccgttcctgttggtgaaaatctcccggtctctcttcatccctgggcctat
gaaaagctgattcagaaacgggaagttctctccttttcaaagatagacgatttaccggct
gaggcagacgttgataaagaaaactggatcgtatggggtatccgatccaacctgaacata
cccattagaatcggaaaacccgttgatcatattgttgccatcaattcagtgaagtacgaa
cgtgtctggccggatgaattgatcccgcgactgcggcttctgggagaaattttcgtcaat
gccctggagcgaagcagagcctggaaggccttgcaggaaagcgaggaacgtctgaacctg
gcgactgtcgcggcgggagccggtctatggattctggacacaaatacgggtcaattctgg
gtgacgcagatgctcagaaaattatttaattttcttcccggggaagaattaagttttgag
cggtatgagaaaacaatccatcccgacgatcggaaaggagtcagagaacttgttcagcga
agcttgaagacgcagaatgatctgaccatcgaatatcgtatcctgaaacccgatgggaat
gtctgctggattatgacccgtgggcgtccatatggcggcgccacgggaattcccctgcgc
ctgatgggcatatgcatggacattacagaaagaaaggagatggaaaacgagctcaggaag
caactggcggagatcaacaaactgaaactccaattggagaaagagaatatttatctccgt
aatgagataaagacggaacggggcttcggcgggattatcggacacagcgataccctgcga
tatgtccttttcagggttcagcaggtcgcccctaccgacgctacggtccttattcttggc
gagaccggtgtgggcaaggggatggtggcccacgccatccacgaaatgagcgcacgcaag
gataagacaatggtcactgtaaactgtgccgccctgccgtcaaacctcatcgaaagcgaa
ctcttcgggcgggagaaaggggcctttacaggtgcttacgcccgacaggccggtcgtttt
gaggtggcggacgggggtacgatcttcctggatgaaatcggtgagctccctcttgaactt
cagacaaagctcctgagggtgctgcaggacggagagttcgagaggcttggttcccccagg
acggtcaaggtggatgtgagggtgatcgcgtcgacgagccgggatctgaaggttgagatg
cacaacgggcggttcagggaggacctctactaccggcttaacacatttcccgttacactg
ccgccgttgaggatgcgagtcgaggacattccggagcttgccaggcattttatagacaag
tattcccggaagttaaacaaacagtttgaatctctttcgaaagatacgatgcagatgctt
caagcgtatgcatggcccggcaatgtgagggagttggaacatgtcatagaaagaggagtc
atcacaagtccggaacctgtatttcagcttgttgaacagcttgaacaggggcctggcatg
gaggctgataagccgattaaggggtttgaaaccatggcgagggagcacatcctgcaggtc
cttcacaaaacagggtggaaaatcgagggtaaaggcggggctgccgccatcctcggtctc
aatccaagcacgcttcggttccggcttaaaaagctggggatcaaacgaccctga
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