Streptomyces atratus: C5746_14005
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Entry
C5746_14005 CDS
T07374
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sata
Streptomyces atratus
Pathway
sata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5746_14005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sata03019
]
C5746_14005
03009 Ribosome biogenesis [BR:
sata03009
]
C5746_14005
Enzymes [BR:
sata01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C5746_14005
Messenger RNA biogenesis [BR:
sata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C5746_14005
Ribosome biogenesis [BR:
sata03009
]
Prokaryotic type
rRNA processing factors
C5746_14005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AXE77870
UniProt:
A0A2Z5JC60
LinkDB
All DBs
Position
complement(3086200..3090285)
Genome browser
AA seq
1361 aa
AA seq
DB search
MPQSNEPGTTGNVEENNAPGDKLPPRRRRRAASRPAGPPVADAQDVAAPAIPADDAAVSD
NTATDAESAPATEAAPPARARRRAVRKATAPAGAPQAAEAVEVVEPVASAEATEPEAEVV
EAPPARARRRAVRKATAPAGAPQAAEAVEVVEPVASAEATEPEAEVVEAPPARARRRAVR
KATAPAGAPQAAEVAEATETAAEPEPEVVEVPPARTRRRAVRKATAPAGAPQAAEAVEIV
EEATHVASAEAAAAAEPEAAAPRGRTRRRASAPAGAPQPTEAPAEAAAPAEAVAEEVVTE
AVEAPRGRRRVVRKATAPAGAPQAAEATAETGEGLPEAAAEEPAAEPAEVEDAAPRGRQR
RRATAAAGRPEFTGKVEEPVRKSRRATRPAVAVFQAPVFAEPMFQTPETAAAAAAASRHE
EVEEETETVEEPTATTEAPAAEAAPQAGSRRRRRRRGEAAEPEPAAAVEVEEHAEEEPEP
EGEAEAEAEHEGEETDEYGDRPSRRRRRGGRRRRRGETTEGDEAAEQFGEEAAAEEDQER
AQEAEEDEDHEASLAGSSSSRRRRRRRRRSGDVPSDADSGTDDPERTVVKVREPRKKEER
EPGTGFDEVQSIKGSTRMEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQN
GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA
GEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG
SMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQ
KKSKSSGSSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSQVAPDLT
DRLSRWTSEVDIFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQG
GNLEETVTKNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRT
KHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSVGGGGNGKRSK
KRGRGVVDHEHVAEIEAEIEAEIETEAEVAAEVAAPVALPEPEFVPDEELYSSPAEAEAA
ASRGRGRRRATRKATAPAGAPKAAAAPAPVVEPEPVVVVVVEPEPVAETPVAAEAPQGRT
RRRATRKATAPAGSPAPAEQVEELVSVVAPVAEAPQPEAAPEEVAPEAAPPRARRRVTRK
VTAPAGSPAGADAAEVVVVTGSVEPKPDAEAAEAEAPAKKAVRKTAKKATAKKAATKKTA
AKTTAAKKTAAKKTTAKKAAAKKTVAAEQSPQPSVSADTES
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgccccagtccaacgaacccggcacgaccgggaacgtcgaagagaacaacgcacccgga
gacaagctgccgccgcgccgcaggcgccgcgccgcgtcccgcccggccggcccgccggtg
gcggacgcacaggatgtcgccgctccggccataccggccgatgacgccgcagtgtccgac
aacaccgccaccgacgccgagagcgctccggcgacagaagccgcgcctcctgcgcgtgcc
cgtcgtcgtgccgtccgcaaggcgaccgctccggcgggtgcgccgcaggcggccgaggcc
gtggaggtcgtggagcccgtcgcgagtgccgaggccaccgagcccgaggccgaggtcgtg
gaggcgccgcctgcgcgtgcccgtcgtcgtgcggtgcgcaaggcgactgctccggcgggt
gcgccgcaggcggccgaggccgtggaggtcgtggagcccgtcgcgagtgccgaggccacc
gagcccgaggccgaggtcgtggaggcgccgcccgcgcgtgcccgtcgtcgtgcggtgcgc
aaggcgactgctccggcgggtgcgccgcaggccgcagaggtcgccgaggccaccgagacc
gctgcagagcccgagcccgaggtcgtggaggtgccgcctgcgcgtacgcgtcgtcgtgcg
gtgcgcaaggcgactgctccggcgggtgcgccgcaggcagccgaggccgtcgagatcgtc
gaggaagccacgcacgtggcgagtgccgaggccgccgcagccgccgagcccgaggccgcc
gcgccgcgtggccgcacccggcgcagggcatcggctccggccggtgcgccccagcccacc
gaggccccggccgaggctgccgcaccggcagaagcagtagcggaagaagtcgtcaccgag
gccgtcgaggccccgcgcggacgtcgtcgtgtcgtgcgcaaggcgaccgctccggcgggt
gcgccgcaggccgccgaggccaccgccgaaaccggcgagggcctgcccgaggccgctgcc
gaggagccggctgccgagcccgccgaggtcgaggacgccgcaccacgcggccgtcagcgc
cgccgggccaccgccgccgcgggccggcccgagttcaccggcaaggtcgaggagcccgta
cgcaagagccgtcgcgcgacgcgccccgccgtggccgtgttccaggcgccggtcttcgcc
gagccgatgttccagaccccggagaccgcggccgccgccgctgccgcttcgcgccacgaa
gaggtcgaggaagagaccgagacggtcgaggagccgaccgccaccaccgaggccccggcc
gccgaggccgcgccgcaggccggctcgcgccgccgtcgccgtcgtcgcggtgaggccgcc
gagcccgagcccgccgccgctgtcgaggtggaggagcacgccgaggaggagcccgagccg
gaaggcgaggccgaggccgaggccgagcacgagggcgaggagacggacgagtacggggac
cggccttcgcgccgtcgccgtcgcggagggcgtcgccgccgtcgtggcgagaccaccgaa
ggtgacgaggccgcggagcagttcggcgaagaggccgccgccgaggaggaccaggagcgc
gctcaggaggctgaggaggacgaggaccacgaggcgtccttggccggatccagcagcagc
cgtcgccgccgtcgccgtcgccgtcgcagcggtgatgtcccgtccgacgccgacagcggt
acggacgacccggagcgtacggtcgtcaaggtccgcgagccccgcaagaaggaagagcgg
gagcccggcaccggcttcgacgaggtccagtccatcaagggctcgacccgtatggaggcg
aagaagcagcgccgccgcgagggccgtgagcagggccgccgtcgcgtcccgatcatcacc
gaggccgagttcctggcgcgccgcgaggccgtcgagcgcgtgatggttgtccgccagaac
ggcgagcgcacccagatcggtgtcctcgaggacaacgtgctcgtcgagcactacgtcaac
aaggagcaggccaccagctacgtcggcaacgtctacctgggcaaggtgcagaacgtactg
ccgtccatggaggccgcattcgtcgacatcggcaagggccgcaacgccgtcctgtatgcc
ggtgaggtgaacttcgaggcgctcggcatggcccacgggccgcgccgtatcgagaccgcg
ctcaagtccggtcagtccgtcctcgtccaggtgaccaaggacccgatcggccacaagggt
gcccgcctgaccagccaggtctcgctgcccggccgctacctggtctatgtgcccgagggc
tcgatgaccggcatcagccgcaagctgcccgacaccgagcgggcccggctgaagaccatc
ctcaagaagatcgttcccgaggatgcgggcgtcatcgtccgtaccgcggccgagggcgcg
agcgaggacgagctgcgccgcgatgtcgagcggctgcagcagcagtgggaggacatccag
aagaagtcgaagagcagcggcagctccaacgcgccgacactgctctacggcgagccggac
atgactgtccgggtcgtccgcgacatcttcaacgaggatttctccaaggtcatcgtcagc
ggcgacgacgcgtgggagaccatccacggttacgtctcgcaggtggcgccggacctgacg
gaccgcctgtcgcggtggacctccgaggtcgacatcttcgcgacgtaccggatcgacgag
cagctcatgaaggcgctggaccggaaggtctatctgccgagcggcggctcgctggtgatc
gacaagaccgaggcgatggttgtcgtcgacgtcaacaccggcaagttcaccggtcagggc
ggcaacctcgaggagaccgtcaccaagaacaacctggaggcggccgaggagatcgtgcgc
cagctgcggctgcgcgacctcggtggcatcgtcgtcgtcgacttcatcgacatggtgctg
gagtccaaccgggatctggtgctgcggcgcctgctggagtgcctgggacgcgaccgtacg
aagcaccaggtcgccgaggtgacctcgctgggcctggtccagatgacccgtaagcgggtg
ggccagggactgctggagtccttctccgagacctgtgtccactgcaacgggcgcggtgtg
atcgtgcacatggaacagccgacctcggtcggtggcggcggcaacggcaagcgttccaag
aagcgcggccggggcgtcgtggaccacgagcacgtggcggagatcgaggccgagatcgag
gccgagatcgagaccgaggccgaggtggctgccgaggtggccgccccggtggcgctgccc
gagccggagttcgtcccggacgaggagctgtacagcagccctgccgaggccgaggcagcc
gcctcgcgaggccgcggccggcgccgcgcgacgcgtaaggcaacggccccggccggcgcc
ccgaaggccgcggcagcacccgctccggtggtcgagccggagccggtcgtggtcgtggtc
gtggagcccgagccggtcgccgagacccccgtggccgccgaggcccctcagggccgtacg
cgccgtcgggcgacccggaaggcgaccgccccggcgggctcgccggccccggccgagcag
gtcgaggaactggtatcggtggtggccccggtcgccgaggccccgcagcccgaggccgca
cccgaagaggtggcccccgaggccgccccgccgcgtgcccgtcgccgggtgacccgcaag
gtcaccgcccccgcgggctcgcccgcaggagcggacgccgcagaggtcgtcgtggtgacc
ggttctgtcgagccgaagcccgacgccgaagccgcggaagcggaggccccggcaaagaag
gcggtgcgcaagaccgcgaagaaggccaccgccaagaaggcagccaccaagaagacggct
gccaagacgaccgctgccaagaagaccgctgcgaagaagacgacggccaagaaggcagcg
gcgaagaagacggttgccgcggagcagtcgccgcagccttccgtctcggccgacaccgag
agctga
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