Streptomyces atratus: C5746_30505
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Entry
C5746_30505 CDS
T07374
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sata
Streptomyces atratus
Pathway
sata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5746_30505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sata03019
]
C5746_30505
Messenger RNA biogenesis [BR:
sata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C5746_30505
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AXE80582
UniProt:
A0A2Z5JJW5
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All DBs
Position
6658540..6660225
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AA seq
561 aa
AA seq
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MSHPHPELGTPPKLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTTIRDRLDDIEGIVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGQRERIGVFDCEFIAVNHSIPDALAVAIRTPAGMAVATGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPKD
HIVIAEDGVVVDLIDGKAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGEEGIISVFI
VVDSSSGKITGGPDIHARGSGIDDSAFSAVVPKIEEAINRSAQDGVLEPHQLQQLVRRTV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcccgaactcggcaccccgccgaagctcccgaagggcggcctccgg
gtcaccccgctcggcggcctcggcgaaatcggccgcaacatgacggtcttcgagtacggc
ggtcgcctgctcatcgtcgactgcggagttctcttcccggaggaagagcagcccggaatc
gacctgatcctgccggacttcaccacgatccgggaccgtctcgacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggtggtgtcccgtacctgctgcgactgaag
ccggacatccccctcatcggctccaagctgaccctcgcgctgatcgaggcgaagctccag
gagcaccgcatccgcccgtacaccctcgaagtcgcggagggccagcgcgagcgcatcggc
gtcttcgactgcgagttcatcgcggtcaaccactccatcccggacgccctcgcggtcgcc
atccgcacacctgcgggcatggccgttgcgaccggcgacttcaagatggaccagctcccg
ctggacggccggctcaccgacctgcacgcgttcgcccggctgagcgaggaaggcatcgac
cttctcctctccgactcgaccaacgcggaggtccccggcttcgtaccgcccgagcgggac
atctccaatgttctgcgcacggtcttcgccaacgctcagaagcgcatcatcgtggcgagc
ttcgccagccatgtgcaccgcatccagcagattctcgacgcggcacacgaatacggccgc
cgggttgccttcgtcgggcgctcgatggtccgcaacatgggcatcgcccgcgatctcggc
tatctgaaggtgcctgcgggcctggtggtcgacgtcaagaccctcgacgaccttccggac
gacgaggtcgtgctggtctgcacgggatcccagggcgagccgatggccgcactgtcccgt
atggccaaccgcgaccatcagatccgcatcgtccagggcgacacggtgatcctggcgtcg
tccctgatcccgggcaacgagaacgcggtgtaccgcgtgatcaacggcctgacccgctgg
ggcgccaatgtcgtccacaagggcaatgccaaggtccacgtctcgggccatgcctcggcc
ggcgagctgctgtacttctacaacatctgcaggccgaagaacctgatgccggtccacggc
gaatggcgccacctcagggccaacgccgaactgggcgccctcaccggtgtacccaaggac
cacatcgtcatcgccgaggacggcgtcgtcgtcgacctcatcgacggcaaggccaagatc
gtcggcaaggtccaggccggttatgtgtacgtcgacggcctctcggtcggggacgtcacc
gagacctccctcaaggaccgccggatcctcggcgaggagggcatcatctccgtcttcatc
gtggtcgacagctcctccggcaagatcacgggcggaccggacatccatgcccgcggctcc
ggcatcgacgactcggcattcagcgccgtcgtgccgaagatcgaggaagcgatcaacagg
tccgcccaggacggcgtgctggagccccaccagctccagcagctggtccgccgcacggtg
ggcaagtgggtctccgacacctaccgccggcgaccgatgatccttcccgtcgtcgtcgag
gtctga
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