Streptomyces atratus: C5746_41280
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Entry
C5746_41280 CDS
T07374
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sata
Streptomyces atratus
Brite
KEGG Orthology (KO) [BR:
sata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sata03016
]
C5746_41280
Enzymes [BR:
sata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C5746_41280
Transfer RNA biogenesis [BR:
sata03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C5746_41280
Prokaryotic type
tRNA splicing ligases
C5746_41280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AXE83323
UniProt:
A0A2Z5JSM9
LinkDB
All DBs
Position
complement(9181094..9182461)
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AA seq
455 aa
AA seq
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MRVPGVVFASRALLPQAAGDKAMEQVANVATLPGIVRASFAMPDVHWGYGFPIGGVAATD
ISRGGVISPGGVGFDISCGVRLLAADLDRESLGHDRMRRLMDILDSTIPRGMGRGGLWKL
SGAGEMDELLVGGARYAVEHGHGVPRDLARCEDYGVLEGAAPGQVSKRAVERGLHQVGSL
GSGNHFLEVQAVDQIYDTATAAAFGLRVGQVCVMIHCGSRGLGHQVCTDHVRVMDQELHR
HRIQVPDRQLACTPVDSPRGHAYLGAMAAAANYGRANRQLLSEATRHAFTTAAGVGLELV
YDISHNTAKLETHEVDGVARSLCVHRKGATRALPPGDPSLPEDLVRAGQPVLVPGTMGTA
SYVMVGLPGNDAFHSACHGAGRVWSRHHALRMVRGEQLRGQLEARGIAVRPSSWRGLAEE
APEAYKDVDAVAAVTEGAGLARLVARLVPLGVVKG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtaccgggggtggtgttcgcctcgcgggctctgctgccgcaggcggccggggac
aaggcgatggagcaggtggcgaacgtggcgacgctgcccggcatcgtccgtgcctccttc
gccatgcccgacgtccactggggctacgggttcccgatcggcggggtggccgccaccgac
atttcccgtggcggagtcatctcgcccggcggcgtcgggtttgacatctcctgcggcgta
cggttgctcgccgccgacctcgaccgcgagtcgctcggccacgaccggatgcggcggctg
atggacatcctcgacagcaccatcccgcgcggcatggggcgtggcggcctgtggaagctg
tcgggggccggggagatggacgagctgctcgtcggcggcgctcggtacgcggtcgagcac
gggcacggtgtgccgcgcgacctcgcacgctgcgaggactacggcgttctggaaggcgcg
gccccggggcaggtgagcaagcgcgccgtcgagcgcggcctccaccaggtgggaagccta
ggctcgggcaaccacttcctggaggtccaggcggtcgatcagatctacgacacggcgacc
gcggcggctttcggactgcgagtgggacaggtgtgcgtcatgatccactgcggctcccgc
ggcctggggcaccaggtgtgcaccgaccacgtccgcgtgatggaccaggaactgcaccgg
caccgcatccaggtcccggatcggcagctggcctgcacaccggtcgactcgccccggggc
cacgcctacctgggggcgatggcggcggccgccaactacggccgggccaaccgccagctg
ctgtccgaagccacccgccacgccttcacgacggctgcgggagtcggtctggagctggtc
tacgacatctcgcacaacacggccaaactcgagacccacgaagtggacggtgtggcacgt
tcactgtgcgtccaccgcaagggcgcgacgcgggcgctgccgcccggcgacccgagcctg
ccggaggacctcgtccgggcgggccagccggtactggtccccgggacgatgggcactgcc
tcgtacgtgatggtcggcctgcctggtaacgacgccttccactccgcctgccacggtgcc
ggccgggtctggagccgccaccacgcgctgcgcatggtccgtggggagcagcttcgcggc
cagctggaggcccggggcatcgccgtgcgcccctcgtcgtggcgtggtctcgccgaggag
gcgccggaggcgtacaaggacgtcgacgcggtcgccgccgtcaccgagggtgccgggctc
gcccggctggtcgcccgtctggtgccgctgggcgtcgtcaagggctga
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