Sinomonas atrocyanea: SA2016_1499
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Entry
SA2016_1499 CDS
T04286
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
satk
Sinomonas atrocyanea
Pathway
satk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
satk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SA2016_1499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
satk03400
]
SA2016_1499
Enzymes [BR:
satk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SA2016_1499
DNA repair and recombination proteins [BR:
satk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SA2016_1499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
PBP_like_2
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AMM32176
UniProt:
A0A126ZZ73
LinkDB
All DBs
Position
1596305..1600027
Genome browser
AA seq
1240 aa
AA seq
DB search
MSVDVLRPASREGAPILEGLRRAVGEDASVARLREYASKPAARRSQDLQVVAPTGLRPVV
VAEVVEALPEPGAVVLAVTATEREAEDLVSALGAYVPAESVALFPSWETLPHERLSPRSD
TVGRRLAVLRRLAHPAAAPADGGGRATGELRVVVAPVRAVLQPLVAGLGDLEPVSLAVGQ
DAPFDDVVRALADAAYARVDMVSHRGEFAVRGGIIDVFPPTEDHPVRVEFFGDEVEQMRW
FAVADQRSLSGPTVHHPTALFAPPCRELLITPAVMGRAARLKGRLPAAADMLEKIAGGIA
VEGMESLAPLLVDRMVPFIGELPAGSAALVMEPEKVRARAHDLAATNEEFLAAAWATASD
GGAAPLDVALAEAGEDSGEHAGRLEDASFATLGEVRSDAQERGVTWWSLTSLGVDQETVL
DIDVVTIAAREPRGYQGDVAEMMEFIGGRVRDEWRIVVATDGPGPAQRLAELFHDANIPC
SRIDGLDRAPDPGIIEITKAPAGKGFVLDGLKLGLLTEADLLGRASAAGTRDMRKMPSRR
RNAVDPLSLTAGDFVVHEQHGIGKFVELVQRKIAGGGHSAGQGAAGAAPTREYMVLEYAP
AKRGAPGDRLFVPTDQLDQVTRYVGGDTPSLSKMGGADWASTKSKAKKAVKEIAGELIRL
YSARMASKGHAFGPDTPWQRELEEAFPYVETPDQLTTINEVKADMEREVPMDRLVSGDVG
YGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVRVRALSRFQTGTE
SKETLEGLKNGSVDVVIGTHRLLSKEVQFKDLGLVIIDEEQRFGVEHKEELKKMRTNVDV
LAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQVSAAIRRELMREGQ
VFFVHNRVSSIDKTAAAIRELVPEARVEVAHGQMSESRLEKIIVDFWEKRFDVLVCTTII
ETGLDISNANTLIIDRADSYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLGEVALERLK
AVAAHNELGAGMQLAMKDLEIRGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADFRGEGE
EKAAEMKIELPVNAHLPHDYVPGERLRLEAYRKLAAATDDAGINEVMEELTDRYGEPPAP
VQNLAAVARFRVRARAAGLTDVALQGNMVRFAPADLPESKQMRLTRMYKGAQYKPALNAV
LIPKPKTAPIGGADLADGEILAWADQVVEAIFAPAPSTTP
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgttgacgtgctgcgcccggcgagccgcgagggcgcccccatcctcgagggcctg
cgccgtgccgtcggggaggacgcgagcgtggcccggctccgcgagtacgcctccaagccg
gcggcccgccgcagccaggacctccaggtggtcgcgcccaccgggctccggccggtggtc
gtcgccgaggtggtcgaggcactgccggaaccgggcgccgtcgtgctcgccgtgaccgcg
accgagcgcgaggcggaggacctcgtctcggcgctgggcgcctacgtcccggccgagtcc
gtcgcgctcttcccgagctgggagaccctcccgcacgagcggctctcgccgcgctcggac
accgtggggcggcggttggccgtcctgcgccgcctcgcgcaccccgcggccgcgccggcc
gacggcggcggccgggccaccggagagctcagggtcgtggtcgcgcccgtgcgcgcggtc
ctgcagccgctcgtggctggcctcggggacctcgagccggtctccctcgccgtcgggcag
gacgcgccgttcgacgacgtggtccgagcgctcgccgacgccgcgtacgcccgcgtcgac
atggtcagccaccgcggcgagttcgccgtgcgcggcggcatcatcgacgtcttcccgccc
accgaggaccaccccgtccgcgtcgagttcttcggcgacgaggtcgagcagatgcgctgg
ttcgccgtcgccgaccagcgctccctcagcgggcccaccgtccaccaccccaccgcgctg
ttcgccccgccctgccgcgagctgctcatcacccccgcggtcatgggccgcgccgccagg
ctcaaggggcggctgcccgccgcggcggacatgctcgagaagatcgccggcgggatcgcg
gtcgagggcatggagtccctcgccccgctcctcgtggaccgcatggtcccgttcatcggg
gagctcccggccgggtcggccgcgctcgtcatggagccggagaaggtgcgcgcccgcgcc
cacgacctcgccgcgaccaacgaggagttcctcgccgccgcgtgggccaccgcgtccgac
ggcggcgccgcaccgctcgacgtcgccctcgccgaggcgggggaggactcgggcgagcac
gccggccggctcgaggacgcgagcttcgccacgctgggcgaggtccgctccgacgcccag
gagcgcggcgtcacgtggtggtcgctcacgtccctcggcgtggaccaggagacggtcctg
gacatcgacgtggtcaccatcgccgcccgcgagccccgcgggtaccagggcgacgtggcc
gagatgatggagttcatcgggggcagggtgcgggacgagtggcggatcgtcgtcgcgacg
gacggccccgggcccgcccagcgcctggccgagctgttccacgacgcgaacatcccgtgc
agccgcatcgacgggctcgaccgcgcccccgaccccggcatcatcgagatcaccaaggca
ccggccggcaagggcttcgtgctcgacgggctcaagctcgggctcctcaccgaggcggac
ctcctcgggcgggcgagcgcggcggggacccgcgacatgcgcaagatgccctcccggcgg
cgcaacgccgtcgaccccctctcgctcaccgcgggggacttcgtggtgcacgagcagcac
gggatcgggaagttcgtcgagctcgtgcagcgcaagatagccggaggcggacacagcgcg
gggcagggcgcggccggtgccgcgccgacgcgcgagtacatggtcctcgagtacgcgccg
gccaagcgcggcgcgccgggggaccggctcttcgtgcccaccgaccagctggaccaggtg
acccggtacgtgggcggggacacgccgtcgctgtcgaagatgggcggggccgactgggcc
tcgaccaagtccaaggccaagaaggcggtcaaggagatcgccggggagctcatccggctc
tactcggcccgcatggcgtccaaggggcacgcgttcgggcccgacaccccctggcagcgc
gagctcgaggaggcgttcccctacgtcgagacgccggaccagctcaccacgatcaacgag
gtcaaggcggacatggagcgcgaggtccccatggaccgcctggtctccggcgacgtcggc
tacggcaagaccgagatcgccgtccgggccgcgttcaaggcggtccaggacggcaagcag
gtggccgtgctcgtgccgaccaccctgctcgcccagcagcactacgagacgttctcggag
cggttctcgggcttcccggtccgcgtgcgggcgctctcgcgcttccagaccggcacggag
tccaaggagacgctcgaggggctcaagaacggctcggtcgacgtggtcatcggcacgcac
cggctcctgtccaaggaggtccagttcaaggacctgggcctggtgatcatcgacgaggag
cagcgcttcggcgtcgagcacaaggaggagctcaagaagatgcgcaccaacgtggacgtc
ctcgcgatgtccgcgacgcccatcccgcgcacgctcgagatgtccctcaccggcatccgc
gagacctccacgctcgccacgccgcccgaggagcgccaccccgtcctgacctacgtgggc
ccgtacacggacaagcaggtctccgccgccatccgccgcgagctcatgcgcgagggccag
gtgttcttcgtgcacaaccgcgtctcctcgatcgacaagacggccgccgcgatccgcgag
ctcgtgcccgaggcgcgcgtcgaggtggcccatggacagatgtccgagtcccggctcgag
aagatcatcgtggacttctgggagaagcgcttcgacgtgctcgtgtgcaccaccatcatc
gaaaccggcctcgacatctccaacgcgaacacgctcatcatcgaccgcgccgactcctat
ggcctctcccagctgcaccagctgcgcggccgggtgggccgcgggcgcgagcgcgcgtac
gcgtacttcctgtacccggcggagaagcccctcggcgaggtcgccctcgagcggctcaag
gcggtcgcggcgcacaacgagctgggcgccggcatgcagctggccatgaaggacctcgag
atccgcggcgccggcaacctcctcggcggcgagcagtccgggcacatccagggcgtgggg
ttcgacctctacatccggctcgtcggcgaggccgtcgcggacttccgcggggagggcgag
gagaaggccgccgagatgaagatcgagctcccggtgaacgcgcacctcccgcacgactac
gtgccgggggagcggctccgcctggaggcctaccgcaagctcgctgccgcgacggacgac
gccggcatcaacgaggtcatggaggagctcacggaccggtacggcgagccgcccgccccg
gtgcagaacctcgcggccgtggcacggttccgggtgcgggcccgcgcggcgggcctgacc
gacgtggcgctccaggggaacatggtgcgcttcgcgcccgccgacctgcccgagtccaag
cagatgcgcctgacccggatgtacaagggggcccagtacaagccggcgctcaacgccgtg
ctcatccccaagcccaagaccgcccccatcggcggtgccgacctcgccgacggggagatc
ctcgcctgggcggaccaggtggtggaggccatcttcgccccggccccctcgaccaccccc
tga
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