Sinomonas atrocyanea: SA2016_2328
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Entry
SA2016_2328 CDS
T04286
Name
(GenBank) Putative ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
satk
Sinomonas atrocyanea
Pathway
satk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
satk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SA2016_2328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
satk03019
]
SA2016_2328
03009 Ribosome biogenesis [BR:
satk03009
]
SA2016_2328
Enzymes [BR:
satk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SA2016_2328
Messenger RNA biogenesis [BR:
satk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SA2016_2328
Ribosome biogenesis [BR:
satk03009
]
Prokaryotic type
rRNA processing factors
SA2016_2328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AMM32997
UniProt:
A0A127A1E6
LinkDB
All DBs
Position
complement(2506759..2509986)
Genome browser
AA seq
1075 aa
AA seq
DB search
MDMEQQPGAAAPDDAAVAEHVAVEQQKPRRTTRRRSASSPAASPAAAQEPAEVDAAVAEA
PQIASTEVSEAEASAAEPPAKPKRATRTRRAAAATKEPTAEPVAAEQAAEAARLQGEQQA
APANDAEAVPAAQPAAEATAAVPAAQPAAEVTGAEGTEATEQKALRRRRTSARAAAVKEE
TRRPEHAAAADQAQAPQDEDAAAPAAGSRAKSSVRARRRAAARPGAAGEAPAEVVQAAAA
AEPEKQAAEPNTRKAAPQESAPARAPREEAAAPQAAEAETGEQPEGGFASLFREPISPTS
MIFQAPDLSTVVRPVAAEPVEDHEEEQEEDEESELTGRRRRRGRGRRGRTRASEAGDDQD
AEHGDADEETDEVTSRRRRRRRRGEADLELEGGLDDDPPGTVTRVRAPRTPSEPTSTRVQ
SVKGSTRLEAKKQRRRESRESGRRRHVITEAEFLARRESVDRQMVVRQKDDRIQIAVLED
GVLAEHFVSKTQQDSLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDAAGLD
GAPRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPD
VERARLKKILKDRLPEDAGVIVRTAAEGASEEELTHDINRLRAQWESIQEQASSTKVLAP
ELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIEAYVTYVAPDLLGRLEKYEADEDV
FAHWRIDEQIHKALDRKVFLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNL
EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL
VQMTRKRMGTGLLEVFSENCEVCGGRGVITHEEPVERGSRPPAPAPEHQAPRGLRAPPPA
AGASAAAAAAGSRPSRRRPRRSPPLRRPTTPSARPAPRRPAPLLPPWQQRPTLPTCTTAS
TPRPPSTHPLPGPPRRRPHSRPHSRPRSRRPQPRPPSRRRRPARPSTPPHGRPRSRCAPW
PRPPRRPGLRQPTGLPRPAPPPKARTAGPSSRSAGSGSRSRTATRRTSPRPPHRP
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggatatggaacagcagccgggcgcagccgcacctgacgacgcagcggtagccgagcac
gtggcagtcgagcagcagaagccccgccgcaccacccggcggcgcagcgcctcgagcccg
gccgcgtcgccggccgccgcccaggagccggcagaggtggacgccgccgtggcggaggcg
ccccagatcgccagcaccgaggtcagcgaggccgaggccagcgcggctgagccgccggcc
aagccgaagcgggcgacccgcacgcgccgcgccgccgccgcgaccaaggagccaaccgcc
gagccggtggctgccgagcaggccgcagaggccgccaggctgcagggggagcagcaggct
gcccccgccaacgacgccgaagccgtcccggcggcccagcctgccgctgaggcgacggct
gccgtcccggcggcccagccagccgctgaggtgacgggcgccgagggcacggaggccacc
gagcagaaggcgctgcgccgacggcggacctccgccagggccgccgcggtgaaggaggag
acgcgccgtcccgagcacgcggccgctgcggaccaggcgcaggcaccgcaggacgaggac
gccgctgctcccgcggccggttcccgggccaagagctcggtccgcgcccgccgccgcgct
gcggcgcgaccgggtgcagccggcgaggccccggccgaggtggtgcaggccgctgccgca
gccgagcccgagaagcaggccgcagagccgaacacccggaaagcggccccgcaggaatcc
gcgccggcccgcgccccgcgcgaggaggcagccgccccgcaagccgccgaggcggagacc
ggggagcagccggagggcggcttcgcgtcgctcttccgggagcccatctctccgacctcg
atgatcttccaggcccctgacctcagcacggtcgtgcggccggtggccgcagagcccgtg
gaggaccacgaggaggagcaggaggaggacgaggagtcggagctgaccggacgccgtcgc
cgccgcggacgcggccgccggggccgcacgcgcgcctccgaggccggcgacgaccaggac
gccgagcacggcgacgctgacgaggagaccgacgaggtcacgtcccgccgccgcaggcgc
cgccgccgcggcgaggccgacctcgagctcgagggcggcctcgacgacgacccgcccgga
acggtgacccgcgtccgcgcgccccgcacgccgtcggagccgacgagcacccgcgtgcag
agcgtgaagggctccacccgcctcgaggccaagaagcagcgccgccgcgagtcccgcgag
tcggggcgccgccgccacgtcatcaccgaggccgagttcctggcgcgccgcgagtccgtg
gaccgccagatggtggtccgccagaaggacgaccgcatccagatcgcggtcctcgaggac
ggcgtgctggcggagcacttcgtctccaagacgcagcaggactcgctcatcggcaacgtc
tacctcggccgggtccagaacgtgctgccctccatggaggcggctttcgtggacatcggc
cgcggccgcaacgccgtcctgtacgccggcgaggtcaactgggacgcggctggcctcgac
ggcgccccgcgccgcatcgagaacgcgctcaagtccggggactccgtcctcgtccaggtc
acgaaggacccggtgggccacaagggtgcgcggctcacgagccagatctccctgcccggc
cgctacctcgtgtacgtgcccggcggatcgatgacgggcatctcccgcaagctgcccgac
gtcgagcgggcgcggctgaagaagatcctcaaggaccggctccccgaggacgccggggtg
atcgtgcgcaccgccgccgagggcgcgagcgaggaagagctcacccacgacatcaacagg
ctccgcgcccagtgggagtcgatccaggagcaggcctccagcaccaaggtgctcgcgccg
gagctcctgtacggcgagcccgacctgaccatcaaggtggtccgcgacgtcttcaacgag
gacttctcgaagctcatcgtgagcggcgaggaggcctgggacacgatcgaggcctacgtc
acctacgtcgcgccggacctcctcggtcggctcgagaagtacgaggcggacgaggacgtc
ttcgcccactggcgcatcgacgagcagatccacaaggcgctcgaccgcaaggtgttcctg
ccctcgggcggctccctcgtgatcgaccggaccgaggccatgacggtggtcgacgtcaac
accggcaagttcaccggctcgggcggcaacctcgaggagaccgtcaccaagaacaacctc
gaggccgcggaggagatcgtccgccagctgcgcctgcgggacatcggcggcatcatcgtg
atcgacttcatcgacatggtgctcgagtccaaccgcgacctcgtgctccgccgtctggtc
gagtgcctcgggcgtgaccgcaccaagcaccaggtggccgaggtcacctcgctcgggctg
gtccagatgacccgcaagcgcatgggcacgggcctgctcgaggtcttcagcgagaactgc
gaggtgtgcggcggccgcggcgtcatcacccacgaggagcccgtggagcgcggcagccgt
ccgccggcgccggcacccgagcaccaggccccccgcggactgagggcgccgccgccagca
gcgggcgcaagcgccgccgccgcggcagcgggcagccggccgagccgcaggcggccccgg
cgcagcccgccgctccgccggccgacgacgccgagcgccaggcccgcgcccaggcgaccc
gcgccgctcttgccgccgtggcagcagcggcccacgctgcccacctgcacgacggcgagc
accccgcgcccgccgagcacgcacccgctgccgggcccgccccggaggcgcccgcacagc
agaccgcacagcagaccgcgcagcaggcgcccgcagccacgtccaccgtcccggcggagg
cggccggcgcggccgagcacgccgccgcacggcaggcccaggagccggtgcgcgccctgg
cctcgtccgccccggcggcccgggctgaggcaacccacgggcctgccacggcccgcgcca
cctccgaaggcgaggacggccggcccgtcctcacgatcggcggggagcggatcgagatcc
cgcacggcgacacgccgcacgagcccccggccgccgcaccggccctga
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