Sinomonas atrocyanea: SA2016_2546
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Entry
SA2016_2546 CDS
T04286
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
satk
Sinomonas atrocyanea
Pathway
satk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
satk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SA2016_2546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
satk03021
]
SA2016_2546
03019 Messenger RNA biogenesis [BR:
satk03019
]
SA2016_2546
Transcription machinery [BR:
satk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SA2016_2546
Messenger RNA biogenesis [BR:
satk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SA2016_2546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AMM33214
UniProt:
A0A127A338
LinkDB
All DBs
Position
complement(2745525..2747672)
Genome browser
AA seq
715 aa
AA seq
DB search
MTQTTELNPAVEASSASESKGIAGLKLAQLQALASQLGITGGSRMRKGDLVAAITAHQKG
EPLARPAERRRPAAKAEATAELPLPETQAAAPAQEAPAAEAPAEAGAPARGRGRTRRRAG
SDGVVTPAAGEPAAQAEAAPSAAAVEAAPAAPEAAPAQEAPEAGTRPSRTRNRNRRAEAG
QGAAEAAQPAREEAPAEAAAPERAEAAPAEAPGRHEEAGEGRGRRERGQQDRAERQERQE
RRRDEGERPQDRAERQDRRRDEGEGEEGGSRRSRRNRRGRDRDEAQQGGRNDRFRDRNER
RRGRSAGPEVDETEVTEDDVLLPVAGILDVLENYAFIRTSGYLPGPNDVYVPLTQVKKYG
LRKGDAVVGAIRAPREGEENQGGSAQGGGRHGSNRQKFNALVRVTSVNGKSPEEMKNRVE
FTKLVPLYPSERLRLETDPKKIGPRVIDLVAPIGKGQRGLIVSPPKAGKTLILQSIANAI
TINNPEVHLMMVLVDERPEEVTDMQRSVKGEVIASTFDRPADDHTTVAELAIERAKRLVE
MGMDVVVLLDSMTRLGRAYNLAAPASGRILSGGVDSAALYPPKRFFGAARNIENGGSLTI
LATALVETGSKMDEVIFEEFKGTGNMELRLSRALADKRIFPAVDVNASGTRREENLLSPE
EVKIMWRLRRVLSGLDTQQALELLTTKIRETGSNVEFLLQVQKTTLAGKGESDRH
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgacacagaccactgagctgaacccagcagtggaagcctcctccgcgtccgagtccaag
gggatcgccggcctcaagctcgcacagttgcaggccttggcgtcccagctgggcatcacc
ggtgggtcccgcatgcgcaagggcgaccttgtcgccgcgatcaccgcccaccagaagggc
gagccgctggcccgtcccgccgagcgccgccgcccggctgcgaaggcggaggccaccgcc
gagcttcccctgcccgagacgcaggccgccgcccccgcccaggaggctcccgccgccgag
gcccccgccgaggccggcgccccggcccgtggccgtgggcgcacccgccgccgcgcgggc
agcgacggcgtcgtgacccccgccgcgggcgagccggccgcccaggccgaggcggcgccg
tcggccgccgctgtcgaggcagcaccggccgctcccgaggccgcccccgcgcaggaggcc
cccgaggccgggacccgcccgagccgcacccgcaaccgcaaccgccgtgccgaggccggc
cagggggccgccgaggccgcccagcccgcccgcgaggaggcaccggccgaggccgccgcc
cccgagcgcgccgaggccgcaccggccgaggcccccggacggcacgaggaggccggcgag
ggccggggccgccgcgagcgcggccagcaggaccgtgccgagcgccaggagcgccaggag
cgccgccgggacgagggcgagcgcccgcaggaccgtgccgagcgccaggaccgccgccgc
gacgagggcgagggcgaggaaggcggctcccgccgctcccgccgcaaccgccgcgggcgc
gaccgcgacgaggcccagcagggcggccgcaacgaccgcttccgcgaccgcaacgagcgc
cgccgcggacgcagcgccggccccgaggtcgacgagaccgaggtgaccgaggacgacgtc
ctcctgccggtcgccggcatcctcgacgtgctcgagaactacgccttcatccgcacctcc
ggctacctcccgggcccgaacgacgtctacgtcccgctcacccaggtcaagaagtacggc
ctgcgcaagggcgacgctgtcgtgggcgccatccgcgccccccgcgagggcgaggagaac
cagggcggcagcgcccagggcggcggccggcacggcagcaaccgccagaagttcaacgcc
ctcgtgcgcgtcacgagcgtcaacggcaagagccccgaggagatgaagaaccgggtcgag
ttcaccaagctcgtcccgctctacccctccgagcgcctgcgcctcgagaccgaccccaag
aagatcggcccccgcgtcatcgacctcgtggcgccgatcggcaagggccagcgcggcctc
atcgtctccccgcccaaggccggcaagacgctcatcctgcagtccatcgcgaacgcgatc
accatcaacaaccctgaggtccacctcatgatggtgctcgtggacgagcggcccgaagag
gtcacggacatgcagcgctcggtcaagggcgaggtcatcgcctcgacgttcgaccgcccg
gccgacgaccacacgaccgtggccgagctcgcgatcgagcgcgccaagcgcctcgtcgag
atgggcatggacgtcgtggtgctcctcgactcgatgacccgcctcggccgcgcctacaac
ctcgccgcgccggcctcgggccgcatcctctccggcggcgtcgactccgccgcgctctac
ccgccgaagcggttcttcggcgcggcgcgcaacatcgagaacggcggctcgctgacgatc
ctcgccaccgccctcgtggagacgggctccaagatggacgaggtcatcttcgaggagttc
aagggcaccggcaacatggagctgcgcctgtcccgcgccctcgcggacaagcgcatcttc
ccggccgtggacgtcaacgcgtccggcacgcgccgcgaggagaacctgctctcgccggaa
gaggtcaagatcatgtggcgcctgcgccgcgtgctctcgggcctcgacacgcagcaggcc
ctcgagctgctcaccacgaagatccgcgagaccgggtcgaacgtcgagttcctcctgcag
gtgcagaagacgaccctcgccggcaagggcgagagcgaccggcactag
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