Sinomonas atrocyanea: SA2016_2555
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Entry
SA2016_2555 CDS
T04286
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
satk
Sinomonas atrocyanea
Brite
KEGG Orthology (KO) [BR:
satk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
satk03019
]
SA2016_2555
Enzymes [BR:
satk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SA2016_2555
Messenger RNA biogenesis [BR:
satk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SA2016_2555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_25
PhoH
nSTAND3
AAA_23
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
AMM33222
UniProt:
A0A127A6E8
LinkDB
All DBs
Position
2756753..2760937
Genome browser
AA seq
1394 aa
AA seq
DB search
MALTITYPAALPVSERRDELMEAIAANQVTIIAGETGSGKTTQIPKMCLELGLGKKGLIG
HTQPRRLAARTVAERIAEELDVELGAEVGFQVRFTGEVGPQTKVKLMTDGILLAEIQRDR
LLRRYSTIIIDEAHERSLNIDFILGYLKRVLPQRPDLKVIITSATIDPERFARHFAREVP
GAEPEPAPIVEVSGRTYPVEIRYRPLVAEPAGSEDEDDSVARSDDALEEDRDPVDAVCDA
VDELSREAPGDILIFFSGEREIRDAAEALAASIQKNPRMAGAEILPLFARLSLAEQHRVF
TPGGKRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQR
AGRCGRVSDGICIRLYSEEDFLSRPEFTDPEILRTNLAAVILQMTAMGIARGPKDVAAFP
FVEPPESRAISDGVTLLRELGALVEPGKEQPGTEQAGKEQAGRGQRPGAESAAELGGAHD
GGRGRRGKRTGAAGERGALTAVGHQLAQLPVDPRLGRMIVEAARRDCAREVMVLAAALTI
QDPRERPSQETGKRQAADEKHARFRDETSDFTGYLNLWNYLQEQQRDLSSSAFRRLCKAE
FINYLRVREWQELFQQLRQLARPLGISLGQGRDTGTPLEAVAKHDAVHQSLLAGLLSHIG
LLDERKREYLGARGTRFAVFPGSALFKKNPTYVMAAELVETSRLWARTAAKMDPAWAELV
APHLVKRTYSEPHWSKRSGSVMAYEKVTLYGVTLVAQRRVNYARIDPALARELFIRHALV
EGDWHTRHHFFKRNQALLEEVEELETRMRRPGLRADDEALFEFYDARVPASVVSERHFDA
WWKKARQEEPHLLDFDRALLLGEDAEGSAAAADAAYPTVWRQGGFDLPLAYEFHPVAPGG
TPDPADGVTAEVPVLFLNQLEPEPFRWQIPGLRTELVTALIKSLPKQVRKAFVPAPDVAR
QAVAALEADFDPAADALEDSLELVLRRLKGQIIPPGSWNWGAVPAHLLMSFSVVDPKGTV
LGAGKDLVALKEQLAPATRRAIAESLGATPATTSPTSPRGGATSPRGGATSPRGGATSPR
GTAAAPAGAPGPAGGSGLAERTGLTEWSVGTVPRTASTVVGGHTVTGYPALVDEGRTKAA
PRGTAGLRVFQTEEDQLRAHRGGVIRLLALRVPPPDRYVLEHLNNREKLTFSQNPHGSVA
DLIADCSVAAIDRLVPAELPWDRAAFDALYDHVRAELIDTVFKVTAIVEQVLASSLRIGK
ALRGSTSLALVSALNDVKAQLEQLVYSGFVARTGYAQLEHLPRYLRAVERRLEKLPTNVQ
RDAVAMAAVQALEDDYDDAVAALAPTGRNEAKLAAVRWMIEELRVSLFAVELGTAGKVSE
KRVRQALNAALAPA
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggccctgacgatcacgtatcccgccgccctcccggtctccgagcgccgcgacgagctc
atggaggccatcgccgcgaaccaggtcacgatcatcgccggcgagaccggctcggggaag
acgacccagatccccaagatgtgcctcgagctcggcctcggcaagaagggcctgatcggc
cacacccagccgcggcggctcgccgcgcgcaccgtcgccgagcgcatcgccgaggagctg
gacgtcgagctcggcgccgaggtcggcttccaggtgcgcttcaccggcgaggtcgggccg
cagaccaaggtcaagctcatgaccgacggcatcctgctcgcggagatccagcgggacagg
ctcctgcggcgctactcgacgatcatcatcgacgaggcccacgagcgcagcctcaacatc
gacttcatcctcggctacctcaagcgcgtgctcccccagcggccggatttgaaggtcatc
atcacctcggcgaccatcgacccggagcgcttcgcccggcacttcgcgcgcgaggtgccc
ggcgccgagcccgagcccgcgccgatcgtcgaggtctcgggccggacctatccggtcgag
atccgctaccggcccctcgtcgccgaaccggccggctccgaggacgaggacgactcggtg
gcccgcagcgacgacgccctcgaggaggaccgggacccggtcgacgccgtgtgcgacgcg
gtcgacgagctctcccgcgaggcgcccggggacatcctcatcttcttctcgggcgagcgg
gagatccgcgacgcggccgaggccctcgccgcctccatccagaagaacccccgcatggcc
ggggcagagatcctgccgctcttcgcccggctctcgctcgccgagcagcaccgcgtcttc
acccccggcgggaagcggcggatcgtgctggccacgaacgtggcggagacctctctgacc
gtccccggcatcaagtacgtcatcgacaccggcacggcgcgcatctcgcgctactcgcac
cgcaccaaggtccagcgtctgccgatcgagcgcgtctcgcaggcctcggcgaaccagcgc
gccggccggtgcgggcgcgtctccgacggcatctgcatccgcctgtactccgaggaggac
ttcctctcccggcccgagttcaccgatccggagatcctgcggaccaacctcgccgcggtg
atcctgcagatgaccgcgatggggatcgcccgcggtcccaaggacgtcgcggcgttcccg
ttcgtcgagccgcccgagtcccgcgcgatcagcgacggcgtgaccctcctgcgcgagctc
ggcgccctcgtcgagccgggcaaggagcagccgggcacggagcaggcaggcaaggagcag
gcgggccgcgggcagcggcctggcgcggagtccgccgcggagctcggcggggcgcacgac
ggcggtcgcggccgccgggggaagcgcaccggtgccgcgggtgagcggggcgcgctgacc
gccgtcggccatcagctcgcccagctgccggtcgacccgaggctcggccgcatgatcgtc
gaggccgcgcggcgggactgcgcgcgcgaggtcatggtcctcgccgcggccctgacaatc
caggacccccgcgagcgcccatcccaggagaccggcaagcggcaggccgcggacgagaag
cacgcgcggttcagggacgagacctcggacttcacgggctacctgaacctctggaactac
ctccaggagcagcagcgcgacctatcctcctccgcgttccggcgcctgtgcaaggccgag
ttcatcaactacctgcgggtgcgcgagtggcaggagctgttccagcagctgcgccagctc
gcccggccgctggggatctcgctcggccaggggcgggacacgggcaccccgctggaagca
gttgcgaagcacgacgccgtccaccagtccctcctcgcgggcctcctgagccacatcggg
ctcctcgacgagcgcaagcgcgagtacctcggcgcccgcggcacccggttcgcggtcttc
cccggatcggccctgttcaagaagaacccgacctacgtcatggccgcggagctcgtcgag
acgagccgcctgtgggcccggacggcggcgaagatggatccggcgtgggccgagctcgtc
gcgccgcacctcgtcaagcgcacgtactcggagccccactggtccaagcgctcgggctcg
gtcatggcctacgagaaggtgaccctctacggcgtcacgctcgtcgcccagcgccgcgtc
aactacgcccgcatcgacccggcgctcgcgcgcgagctgttcatccggcatgccctcgtc
gagggcgactggcacacgcggcaccacttcttcaagcgcaaccaggccctcctggaggag
gtcgaggagctcgagacgcgcatgcggcgccccgggctgcgggcggacgatgaggcattg
ttcgagttctacgacgcgcgggtcccggcgtccgtggtctccgagcggcacttcgacgcg
tggtggaagaaggcccggcaagaggagccgcacctgctcgacttcgaccgcgccctgctc
ctgggcgaggacgccgagggctcggccgcggcggccgacgccgcctacccgacggtctgg
cgccagggcggcttcgacctgccgctcgcctacgagttccaccccgtcgcgccggggggc
accccggacccggccgacggcgtgaccgccgaggtgccggtgctgttcctcaaccagctc
gagcccgagccgttccgctggcagatccccgggctgcgcaccgagctcgtcaccgccctc
atcaagtcgctgccgaagcaggtgcgcaaggccttcgtgcccgcccccgacgtggcgcga
caggccgtcgcggccctcgaggccgacttcgacccggcagccgatgccctcgaggactcc
ctcgagctcgtgctgcgccggctcaaggggcagatcatcccgcccggctcatggaactgg
ggcgccgtcccggcccacctgctcatgtccttcagcgtcgtggacccgaagggcaccgtg
cttggcgccggcaaggacctcgtggccctcaaggagcagctcgccccggccacgcggcgc
gcgatcgccgagtccctcggcgccacccccgccaccacctcgccgacgtcaccccgtggg
ggcgcgacgtcaccccgtgggggcgcgacgtcaccccggggcggcgcgacgtcaccccgc
ggtacggccgccgcccccgccggagcgccgggtccggccggagggtccgggctggccgag
cgcaccgggctgacggagtggagcgtggggacggtcccgcggacggcgagcaccgtcgtc
ggcggccacaccgtgaccggctatcccgccctcgtcgacgagggccggaccaaggcggcg
ccgcgcggcacggccggcctgcgggtgttccagaccgaggaggaccagctgcgcgcccac
cgcggcggagtcatccgcctgctggcgctgcgcgtcccgccgcccgaccggtacgtgctc
gagcacctcaacaaccgcgagaagctcaccttcagccagaacccgcacggctcggtcgcg
gacctcatcgccgactgctcggtggccgcgatcgacaggctcgtccccgcggagctgccg
tgggaccgcgcggccttcgacgcactctacgatcacgtccgcgccgaactcatcgacacg
gtcttcaaggtgacggcgatcgtcgagcaggtgctcgcgtcctcgctgaggatcggcaag
gcgctcaggggttccacgagcctcgcgctcgtgagcgcgctcaacgacgtcaaggcgcag
ctcgagcagctcgtctactcgggcttcgtcgcgaggaccggctacgcccagctcgagcac
ctcccccgctacctccgggcggtcgagcgccggctcgagaagctccccaccaacgtccag
cgcgacgcggtcgccatggccgccgtccaggcgctcgaggacgactacgacgacgccgtg
gcggccctcgcgccgaccggccgcaacgaggccaagctcgccgcggtgcggtggatgatc
gaggaactgcgggtgagcctgttcgccgtcgagctaggcaccgccgggaaggtctccgag
aagcgggtgcggcaggcgctcaacgcggccctcgcccccgcctag
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