Sinomonas atrocyanea: SA2016_3030
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Entry
SA2016_3030 CDS
T04286
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
satk
Sinomonas atrocyanea
Pathway
satk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
satk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SA2016_3030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
satk03021
]
SA2016_3030
03400 DNA repair and recombination proteins [BR:
satk03400
]
SA2016_3030
Enzymes [BR:
satk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SA2016_3030
Transcription machinery [BR:
satk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SA2016_3030
DNA repair and recombination proteins [BR:
satk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SA2016_3030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
Motif
Other DBs
NCBI-ProteinID:
AMM33695
UniProt:
A0A127A4Y5
LinkDB
All DBs
Position
complement(3255360..3259259)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSNESSFGLMQIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITRVDEERRHEQLPNLQAEHDLERKRLVDNRDSDIAAVARDLEGE
LGKLEAEGAKAADKKKARDLADKTMATIRKRADADIERLEAVWDRFKNLKVADLEGDEAL
YRELRDRYGMYFEGSMGAEAIQKRLQSFDLEAEAESLRDIIQNGKGQRKTRALKRLKVVN
AFLTTENKPTGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKREGAAGEGR
VFSSVAEAIMAHDARELHLNAQVKIRLEGFVPSKDRPAPEGWEPGTPALVDTSLGQVVFN
QTLPEDYPWVEAVADKGQLSKIVNDLAERYPKVVVAQTLDNLKDAGFHWATRSGVTVAIS
DIAVPEAKPEILAGYEDRAAKIQSQYDRGLIDDEERRSELIEIWDKATTEIASVMRESMP
KMNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREEDCGTERGLMVTIAVADHNGELTREE
NVENTAYTRTLAVDVTDSKGTVLAEAGADLGDVLINQLINAGITEIRVRSVLTCESAVGT
CAKCYGRSLASGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSASGGEDITQGLP
RIQELFEARTPKGVAPISEAAGRVAIEDTEKQLRIVLTPDDGTEEIAYPVSRRARLLVED
GDRVTVGQKLVNGPVDPKQVLRIQGPREAQKFLVDEVQGVYRSQGIGIHDKHVEVIVRQM
LRRVTVIESGDTDLLPGELAEGRRYRDENRRVVSEGKRPASGRPELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTDITVEPTEEAKAT
LFTGPSAFSDFAYDPLNGDGVQEFHAIPLDDYDLGGDYR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaacgaatcctccttcggcctcatgcagatcggcctggcgaccgcggatgacatc
cgcacctggtcgcacggcgaagtgaagaagccggaaaccatcaactaccgcaccctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgtcgcgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcacccgtgccaaggtccgccgcgagcgcatgggccacatcgagctcgccgcgccc
gtgacgcacatctggtacttcaagggcgtcccgtcgcgcctcggctacctgctcgacctg
gccccgaaggacctcgagaaggtcatctacttcgcggcctacatgatcacccgggtcgac
gaggagcgccgccacgagcagctgcccaacctccaggctgagcacgacctcgagcgcaag
cgcctcgtcgacaaccgcgactccgacatcgccgctgttgcccgcgacctcgagggcgag
ctcggcaagctcgaggccgagggcgccaaggccgcggacaagaagaaggcccgcgacctc
gccgacaagacgatggccacgatccgcaagcgtgcggacgccgacatcgagcgcctcgag
gccgtgtgggaccgcttcaagaacctcaaggtcgccgacctcgagggcgacgaggctctc
taccgcgagctccgtgaccgctacgggatgtacttcgagggctcgatgggcgccgaggcg
atccagaagcgcctccagtccttcgatctggaggcggaggccgaatcgctccgcgacatc
atccagaacggcaagggccagcggaagacccgtgcgctcaagcgcctcaaggtcgtcaac
gcgttcctcaccacggagaacaagccgaccggcatggtcctggacgccgtcccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggcggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcctgcttgacctc
ggtgcgccggagatcatcgtcaacaacgagaagcgcatgctccaggaggccgtggactcg
ctgttcgacaacggccgccgtggccgtccggtgacgggtccgggcaaccgcccgctcaag
tcgctctcggacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgccgaagcagatggcactcgagctgttcaagccgttcgtcatgaagcggctc
gtggacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcggtaccgc
ccgcaggtctgggacgtgctcgaggagatcatcaccgagcacccggtgctgctcaaccgt
gcacccaccctgcaccgcctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgcgcggcgttcaacgccgacttcgacggcgaccag
atggctgtgcacctgccgctgagccccgaggcccaggcggaggcgcgcatcctgatgctc
tcctcgaacaacatcctcaagccgtcggacggccgtcccgtcaccctgccctcgcaggac
atgatcatcggcctgtaccacctcaccaccaagcgtgagggtgcggccggcgagggtcgg
gtgttctcctcggtggccgaggcgatcatggcgcacgatgcgcgcgagctgcacctcaac
gcgcaggtgaagatccggctcgagggctttgtgccctcgaaggaccgtcccgcgcccgag
ggctgggagcccggcacgccggcgctcgtggacacctcgctgggccaggtcgtgttcaac
cagaccctgcccgaggactacccctgggtcgaggccgtggcggacaagggccagctctcg
aagatcgtcaacgatctcgccgagcgctacccgaaggtcgtcgtggcgcagaccctggac
aacctcaaggacgccggcttccactgggccacgcgttcgggtgtcacggtcgcgatctcc
gatatcgccgtccccgaggccaagccggagatcctggccggctacgaggaccgcgcggcg
aagatccagagccagtacgaccgtggtctcatcgacgacgaggagcgccgctccgagctc
atcgagatctgggacaaggcgaccaccgagatcgcgtcggtcatgcgcgagtccatgccg
aagatgaacaccatcaatcgcatggtctcctccggtgcccgaggcaactggatgcaggtc
cgccagatcgccggtatccgcggcctcgtggcgaacccgaagggcgagatcatcccgcgc
ccgatcaagtcctcgtaccgcgagggcctgtcggtgctcgagtacttcatcgccacgcac
ggtgcccgcaagggtctggcggacacggccctccgtaccgccaactcgggctacctgacg
cgtcgtctcgtcgacgtctcgcaggacgtgatcgtgcgcgaggaggactgcggcaccgag
cgcggcctcatggtcacgatcgcggtcgccgaccacaacggcgagctcacccgcgaggag
aacgtcgagaacacggcctacacccgcacgctcgcggtggacgtcacggactccaagggc
accgtcctcgccgaggccggcgccgacctgggcgatgtgctgatcaaccagctcatcaac
gcgggcatcacggagatccgggtccgctcggtcctcacgtgcgagtccgcggtcgggacc
tgcgccaagtgctacggccgctcgctggcctccggcaagctcgtggacatcggcgaggcc
gtcggcatcatcgccgcgcagtccatcggcgagcccggcacgcagctcaccatgcgtacg
ttccacaccggtggcgccgtctcggcgtccggcggcgaggacatcacgcagggtctgccc
cgtatccaggagctcttcgaggcccgcacccccaagggtgtggccccgatctccgaggcc
gcaggccgcgtggcgatcgaggacaccgagaagcagctgcgcatcgtcctcaccccggac
gacggcaccgaggagatcgcctacccggtctcccgccgtgcgcgtctcctcgtcgaggac
ggcgaccgcgtcaccgtcgggcagaagctcgtcaacggcccggtcgacccgaagcaggtc
ctgcgcatccagggcccgcgcgaggcgcagaagttcctcgtcgacgaggtccagggcgtg
taccgcagccagggcatcggcatccacgacaagcacgtggaggtcatcgtccgccagatg
ctgcgccgcgtcacggtcatcgagtcgggcgacacggacctgctgccgggcgagctcgcg
gagggccgccgctaccgagacgagaaccgccgcgtggtctccgagggcaagcggccggcg
tcgggccgtcccgagctcatgggcatcaccaaggcctcgctggccacggagtcctggctc
tcggccgcgtccttccaggagaccacccgcgtgctcacgcaggcggccatggagggcaag
agcgacccgctgctgggcctcaaggagaacgtcatcatcggtaagctcatcccggccggt
acgggtcttccccggtacaccgacatcacggtcgagcccaccgaggaggccaaggcgacg
ctcttcaccggtccgagcgccttcagcgacttcgcctacgatccgctgaacggcgacggg
gtccaggagttccacgcgattccgctggacgactacgacctgggcggcgactaccgctga
DBGET
integrated database retrieval system
