Spiroplasma mirum GNAT3597: SATRI_v1c02960
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Entry
SATRI_v1c02960 CDS
T03973
Name
(GenBank) metallo-beta-lactamase superfamily hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
satr
Spiroplasma mirum GNAT3597
Pathway
satr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
satr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SATRI_v1c02960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
satr03019
]
SATRI_v1c02960
Messenger RNA biogenesis [BR:
satr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SATRI_v1c02960
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GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
LidA_Long_CC
Motif
Other DBs
NCBI-ProteinID:
AKM52823
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Position
267749..269416
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AA seq
555 aa
AA seq
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MSKISFFALGGLDERGKNLYCVEVDQDIFVFDAGTKNPERGILGIDVVISNFDYLKENRN
RIKGIFITKPSDECSEAVTYILKEVAIPIYGSKLTAHILNFHLQRFKVRGKEELFKVVNP
HNVIEFGPCKVEVFATTTNMPNSYGYVLHTPDGVIIYPGDYMFDAKADPDFAMDMQHLTD
IATHNKVLLFLSEASSASRMDYTAPNHKIKSYIERAVKEAQGRLILACFDQDLHKINELF
DLVRENNINVGIYGQTLLEALKVINANNQMNLEGINLKTLHDVVNDEKSLIIVTGSGERL
YSRLIKIASGNDDILDIKETDTIILATPPNPGSELNHANVLDELARTVAKTTALSDRKIW
TMTASYEDIKLMTSILKPQYFIPVKGLYKDFVKAKQAANEAGVPVENIFLCDNGESVNFT
NGEFDKVIGKVKTSDLYVDGIGVGDIGAVVLNERKQLATDGVVIIGVSIDAKTKAITSLI
DTQMRGVIYIQENNDIFKKMQKVITDIIEKHHKKAIAGEMYDVNEVKNEIRSTVLSFVKL
ETGKTPIILAIVNEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaattagtttttttgcccttggggggctagatgagcgcgggaagaatttatat
tgcgtggaagttgatcaagatatttttgtttttgatgcgggaacaaaaaatccggaacgg
ggaattttaggaatcgatgttgttatttctaattttgattatttaaaagaaaatcgcaat
cgcattaaggggatttttattactaaaccttccgatgaatgttcagaagcagttacttat
attttaaaagaagtcgcaattccaatttacggaagtaaactaactgctcatattttaaat
tttcatctccaacgttttaaagttcgtgggaaagaagaactgtttaaagttgttaacccg
cataatgttattgaatttggaccttgcaaagttgaagtttttgcaaccacaacaaacatg
ccaaatagttatggttatgttttgcatactccggatggggtgattatttacccgggggat
tatatgtttgatgcaaaagctgaccctgattttgccatggatatgcaacatttaactgac
attgctacccataataaagtattattatttttatcagaagcttcatcagcctcacgaatg
gactatacggcgccaaaccataaaattaaaagttatattgaaagagcagttaaagaagca
cagggccgcttaattttagcttgttttgatcaggacttacataaaataaatgaattattt
gatttagtgcgtgaaaacaatattaatgtcggaatttatggtcaaactttattagaagct
ttaaaagtaattaatgcaaataaccaaatgaacttagaaggaattaaccttaaaacttta
catgacgttgttaatgatgaaaaatcattaattatagtaacgggcagtggtgaacgttta
tatagtcggttaattaaaattgctagtgggaatgatgatattttagatataaaagaaact
gacaccattattttagcaactccaccaaatccggggagtgaactaaaccatgcgaatgtg
ttagatgaactagcccgtacggtggcgaaaacaactgctttatcagatcgcaaaatctga
acaatgactgctagttatgaagatattaaattaatgacttcgattttaaaaccacaatac
tttattccggttaaagggttatataaagactttgtcaaagcaaaacaagccgctaacgaa
gcaggggttccagttgaaaatattttcttatgtgataatggggaaagtgtgaactttaca
aatggtgaatttgataaagtaattggcaaagttaaaacttctgacttatatgttgatggg
atcggtgttggtgatattggggctgtggtgttaaatgaacgaaaacaattagcaacagat
ggggttgttattattggagtttcaattgatgcaaaaacaaaagcaattacttccctaatt
gatacccaaatgcgtggtgttatttatattcaagaaaataatgatatttttaaaaaaatg
caaaaagtaattaccgatattattgaaaaacaccataaaaaagcaattgctggagaaatg
tatgatgttaatgaagttaaaaatgaaattcggagtaccgtgttatcttttgttaaattg
gaaaccgggaaaaccccaattattttagcaattgtaaatgaaatctaa
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