Spiroplasma mirum GNAT3597: SATRI_v1c04660
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Entry
SATRI_v1c04660 CDS
T03973
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
satr
Spiroplasma mirum GNAT3597
Pathway
satr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
satr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SATRI_v1c04660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
satr03019
]
SATRI_v1c04660
03009 Ribosome biogenesis [BR:
satr03009
]
SATRI_v1c04660
Enzymes [BR:
satr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SATRI_v1c04660
Messenger RNA biogenesis [BR:
satr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SATRI_v1c04660
Ribosome biogenesis [BR:
satr03009
]
Prokaryotic type
rRNA helicases
SATRI_v1c04660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Cas3-like_C_2
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
AKM52966
LinkDB
All DBs
Position
412140..413423
Genome browser
AA seq
427 aa
AA seq
DB search
MNFNKLNLKQELHRAILKTGYVKATEIQQKAIPVAIDNYDIIGKSHTGTGKTAAFVLPIL
HNLDVNLKKPQAIILCPTRELATQVLDQVRKYALFLHGVNATLLCGGSQIKSQIYALKKA
NVVVGTPGRIADHLHRHTLRLNNIKTIVLDEADEMLKMGFKKDIDLVFNNAPQNYQTLLF
SATMSKPVLEITNTYQKNPVSITIQKNADEQNNIDQYYINTYGLNKEEVLIKLYQDLKPK
LSIIFSNTKMYTEKIAKLLTNNGIKSRVINGDKKQVDRYRSMQAFRNHEVRVLIATDVAA
RGIDVDGIDYVFNYDLPVELESYTHRIGRTARAGAKGTAITFINSRNSLNELRKIEQYQK
KQINPYDISSYNFTKDYAKAPTNAPLKFKKTFGSKNNRSWNKPAKYKKEWTNHHQEYQFN
RSFKKTK
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaataaattaaatttaaaacaagaattgcatcgcgcaattttaaaaacgggt
tatgtgaaagctacggaaattcaacaaaaagcaattccagttgccattgataattatgac
attattggaaaatcacataccggaactggcaaaacagcagcgtttgttttaccaatctta
cataatttagatgttaacttaaaaaaaccacaagcaataatattatgtccaacccgcgaa
ttagcaacccaagtgctagatcaggttcgtaaatacgcgttatttttacacggcgtaaat
gctacattattatgtggaggatcacaaataaaaagtcaaatttatgctttaaaaaaagca
aatgtggtggttggaacaccagggcggattgcagatcatcttcatcgtcacactttacgc
ttaaataatatcaaaacaattgttctagatgaagccgatgaaatgctaaaaatgggcttt
aaaaaagatattgatttagtttttaataatgcccctcaaaattaccaaaccttattattt
tcagcaacaatgtcaaaaccagtgctggaaattactaatacttatcaaaaaaatccggtt
agtattactatccagaaaaatgctgatgaacaaaataacattgatcagtactatattaac
acttatgggttaaacaaagaagaagtgttaattaagttatatcaagatttaaaaccaaaa
ttaagtattatcttttccaatactaaaatgtatactgaaaaaattgcaaaattattaact
aataatgggattaaatcacgggttattaatggtgataaaaaacaagttgatcgttaccgt
tcaatgcaagcttttcggaaccatgaagttagggtgttaattgcgacagatgttgccgcc
cgggggattgatgttgatggtattgattatgtttttaactatgatttacccgttgaacta
gaaagttatacccaccggattgggcgaactgctagagcgggagccaaaggaacagcaatt
acttttattaattcgcgtaatagtcttaatgaattacgcaaaattgaacaatatcaaaag
aaacaaattaacccatatgatattagtagttataatttcacaaaagattatgcaaaagca
cctactaacgctcctctaaaatttaaaaaaacgtttggtagtaaaaataaccgttcatga
aataaaccagcaaaatataaaaaagaatgaactaaccaccatcaagaatatcaatttaat
cgtagttttaaaaaaactaaataa
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