Staphylococcus auricularis: I6G39_01495
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Entry
I6G39_01495 CDS
T07334
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saul
Staphylococcus auricularis
Pathway
saul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6G39_01495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saul03400
]
I6G39_01495 (mfd)
Enzymes [BR:
saul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6G39_01495 (mfd)
DNA repair and recombination proteins [BR:
saul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6G39_01495 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
DUF1421
RecG_dom3_C
Glyco_hydro_115
IstB_IS21
Mfd_cyano
Motif
Other DBs
NCBI-ProteinID:
QPT06369
LinkDB
All DBs
Position
327658..331173
Genome browser
AA seq
1171 aa
AA seq
DB search
MKSIITEYINKTERYQELDELFGQANILVTGLSPSAKATMLAEKYLRSPEQMLIVTNNLY
QADKLESDILQFVESDEVYKYPMQDIMTEEFSTQSPQFMSERVRTLTALAHGERGLFIVP
LNGLKKWLTPVDMWQSHQLTLKIGDEIDIDELLNKLVNMGYRRETVVSHIGEFSMRGGII
DIFPLIGEPVRIELFDTEVDSIRMFDVESQRSQDNMDEVHITTASDYIITDDVLSHTKTQ
LKAAYEETRPKIDKSVRNDLKETYESFQLFEDNLFDHQVLRRLVAFMYEQPATLIDYFKD
NVTVVVDEYNRIKETETSLNTEVEEFMQNLIESGKGFIGQRFMYDDTFDHLLEGHPIAYF
TLFTSTMPVKLSDIIKFSCKPVQQFYGQYDIMRSEFNRYVQQNNTVVVLVETEKKKERIQ
SMLNEMHIPSTIDDTNVSDTEGKVIITEGSLSEGYELPYMQLVVITERELFKTKQKKKRK
QRQTLTNAEKIKSYQDLKVGDYIVHVHHGVGRYLGVETLDVGGVHKDYIKLQYKGTDQLF
VPVDQMDQVQKYVASEDKTPKLNKLGGTEWKKTKAKVQQNVEDIADELIALYKEREKSVG
YQYGPDGVEQHDFEMDFPYELTPDQDKSIEEIKQDMERQRPMDRLLCGDVGYGKTEVAVR
AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPINIHLMSRFRTTKENKETKEGLK
SGEVNIVIGTHKLLAKDVQYKDLGLLIVDEEQRFGVRHKERIKSLKANVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFVKEALERELSRDGQVFYLYNKVQ
SIYEKREQLQMLMPDARIGIAHGQMTERDLEETMLSFMNHEFDILVTTTIIETGVDVQNA
NTLLIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEERLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKQGIPEPVNEAPEVE
IELNIDAYLPASYIPSEQAKIEIYKKLRKVEDTEQLMDIKDELIDRFGDYPEEVARLLDM
MEIKVHALHAGVTSVKDTGKEIDMVLSESSTNEINGEVLFKETMPLGRALKVGVQENKMK
VVLTKQNNWLDNLKFLAKCLEESMAIVDEKV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaataattacagaatatataaataaaaccgaaagatatcaagaattagacgag
ttatttggacaagcaaatatcctagtcactgggctatcaccttcagctaaagcaaccatg
ctcgctgaaaagtatttaagaagcccggaacagatgctgatcgtgacaaacaatctttat
caagctgataaattagaatctgatatactccaatttgttgaaagtgacgaagtttataaa
tatccgatgcaggacattatgacggaagaattttcaacacaaagccctcaattcatgagt
gaacgcgttagaacattgacggcgctcgcacatggtgagagagggttatttatcgtgccg
ttaaatggtctgaaaaaatggttaacaccggtcgacatgtggcaatcccatcaactaact
ttgaaaatcggtgatgagatcgatattgatgaactgcttaataagttagtaaatatgggg
tatcgtcgtgaaactgtcgtatctcatataggtgaattttcaatgcgtgggggtattata
gacattttcccactgattggtgaacctgtacgtatagaactattcgatacagaagtggat
tccattcgtatgtttgatgtagaatcacaacgttctcaagataatatggatgaagtgcat
attacgaccgcaagtgactacatcattacggatgacgtgttgagccatacgaaaacacag
ctcaaagctgcttatgaagagacccgtccaaaaatcgacaaatctgtacgtaatgatttg
aaagaaacctacgaaagcttccaattattcgaggataatctgtttgatcatcaagtgtta
cgccgtttagtggcattcatgtatgaacaacccgcaacgctaattgattacttcaaagac
aacgtcacagtcgtagtagacgaatacaaccgcatcaaagaaacagaaacatcgttgaac
acagaagttgaagaatttatgcaaaacttaatcgaaagtggtaaaggcttcatcggacaa
cgctttatgtatgatgatacctttgatcatttactcgaaggtcatccgattgcttacttc
acactattcacgtctactatgccggtgaaattaagtgatattattaaattttcatgtaaa
ccagttcaacaattttacgggcaatacgatatcatgcgttcagaatttaaccgttacgtg
caacaaaataatacggtcgtcgtgttagtagagactgagaagaaaaaagaacgcattcaa
agtatgttgaatgaaatgcacattccttctacgatcgacgatacaaatgtctctgataca
gaaggtaaagtgatcattactgaaggcagcctatcagaaggttatgaactgccgtatatg
caactggttgttattactgaaagagaactattcaaaacgaaacagaagaaaaaacgtaag
caacgtcaaacactgacaaatgctgaaaaaattaaatcatatcaagatcttaaagtcggc
gattatattgtccatgtccatcatggtgtcggccgttatttaggcgtggaaaccttagat
gtcggtggcgtgcataaagactatattaaacttcaatataaagggactgaccaactgttt
gtacctgtggaccaaatggatcaagtccaaaaatatgtggcttccgaagataaaacaccg
aagttaaataaactcggtggtacggaatggaagaaaacaaaagccaaagtccaacaaaac
gtggaagatatcgctgatgaactcatcgccttatacaaagaacgtgaaaaatcagtcgga
tatcaatatggccctgatggcgtagaacagcatgactttgaaatggacttcccttacgag
ctcacacccgaccaagataaatctatcgaagaaatcaaacaagatatggaacgacaacgt
ccaatggatcgcttattatgtggtgatgttggttacggtaaaaccgaagttgctgttcgt
gctgcattcaaagctgtcatggaaggaaaacaagtcgccttcttagtaccgacaaccatc
ttagcgcaacaacactacgaaacattaatcgaacgtatgcaagacttcccaatcaacatt
catttaatgagccgcttcagaacaaccaaagaaaacaaagaaacgaaagaaggcttaaaa
tctggcgaagtcaacattgtcatcggtacacataaattactcgcaaaagatgtgcaatat
aaagatttaggccttctcattgtcgatgaggaacaacgttttggggtgcgccataaagaa
cgtattaaatcactgaaagcgaacgtcgatgtgctcacactcactgcgacgccaattcca
cgtacgcttcacatgagtatgttaggggtgcgcgacttatctgtcattgaaacaccacca
gagaaccgcttcccagtgcaaacgtacgtattagaacaaaacatgagctttgttaaagag
gcgctagaacgcgaattatctagagatggacaagtattctatctctacaataaagtgcaa
tctatatacgaaaaacgtgaacaacttcaaatgttgatgccagatgcacgtatcggtatc
gcacatgggcaaatgactgagcgagatttagaagaaacgatgctgagcttcatgaatcat
gaattcgacattttagtcacaacgacgattatcgaaacaggtgtcgatgtgcaaaatgcg
aatacattattgattgaagatgctgaccgcttcggcttaagtcaactctatcaattacgt
ggtcgtgtcggtcgttcgagccgtatcggttatgcttatttcttacacccaacgaataaa
gtactcagtgaaacagcagaagaacgattacaagctatcaaagaattcactgaactcggt
tccgggtttaaaatcgcgatgcgtgacttgaacattcgaggtgctggtaacttacttggt
aaacaacaacacggctttattgattctgtcggtttcgacttgtattcacaaatgctagaa
gaagcggtaaatgaaaaacaaggtattccagagccagtgaatgaagcacccgaagtcgag
atagaactcaatatagatgcgtacttacctgcatcttacattccaagcgaacaagcgaaa
atagaaatttataaaaaattacgcaaagtggaagataccgaacaattaatggacatcaaa
gacgaactcatcgaccgcttcggagattatccagaagaagtcgcacgtctgttagatatg
atggaaattaaagtgcatgccttacatgcaggtgtaacttctgtgaaagatacaggtaaa
gagatcgacatggtcttatcagaaagcagcaccaatgaaatcaacggcgaagtactattt
aaagaaacgatgccactcggccgtgcgctcaaagtgggcgtccaagagaacaagatgaaa
gtggtactcacaaaacaaaataactggttagacaacttgaaattcctagccaaatgtctt
gaagaaagtatggctatcgtggatgaaaaagtataa
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