Streptomyces autolyticus: BV401_16520
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Entry
BV401_16520 CDS
T04980
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sauo
Streptomyces autolyticus
Pathway
sauo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sauo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV401_16520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sauo03019
]
BV401_16520
03009 Ribosome biogenesis [BR:
sauo03009
]
BV401_16520
Enzymes [BR:
sauo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BV401_16520
Messenger RNA biogenesis [BR:
sauo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BV401_16520
Ribosome biogenesis [BR:
sauo03009
]
Prokaryotic type
rRNA processing factors
BV401_16520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AQA16261
LinkDB
All DBs
Position
complement(4121428..4125555)
Genome browser
AA seq
1375 aa
AA seq
DB search
MAPRAAAPGESIESTPSDTLPPRRRRAASRPAGPPPGAVSEAEVTTSSAPAIPADQIAVA
EAASEPVAAGAAMATASAAGADPESAAPPARTRRRVARKATSPAGSPEAAETVVSADAGR
GGEETEAAAEPVSEAVTEAAPEAAPPARTRRRATRKVTAPAGAPAEAEVVEPEEPEELEE
PEESAAVSEAEAEAETVPAAAARSRRRATRKATAPAGPPQAETADADASSTAAAGGSGDE
TTAPAAVAVDAPADEAPRTRTRRRTTRKTTAPADAPVEPERAEEPAAAAEAEAEAETVPA
AAARTRRRATRKATAPAGAPAEAEASEEPAAEEQRGESPEEPAGAQAEEAPRTRTRRRAA
RGTAPAAEEPSGAPEAQGAEPEAGAPAAEAASEPEPAPRSRRRAARPPTAVFQAPVFTEP
VFQTPESAAAEAAAALEGADDADADEDEPTAEATEAVEPETSAGRRRRRRRGAPAEEHPE
PEETEAAESETESETEAESGHPEGEHGEEEPGDRPARRRRRGGRRRRRGETAEGAEGAEG
RSEGETGERYEDESAADGEGAEEQGEGRDESGAESGESGGSTSSRRRRRRRRRSGEAAEA
ETTGGDDPERTVVKVREPRERRGKEAESSADEVQSIKGSTRLEAKKQRRREGREQGRRRV
PIITEAEFLARREAVERVMVVRQNGDRTQIGVLEDNVLVEHFVNKEQATSYVGNVYLGKV
QNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGLANGPRRIETALKSGQSVLVQVTKDPI
GHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVIVRTA
AEGASEDELSRDVARLQAQWEEIKKKAKNGGAPSLLYGEPDMTVRVVRDIFNEDFSKVIV
SGDDAWQTIHGYVSHVAPDLADRLQKWTSDVDVFATYRIDEQLMKALDRKVWLPSGGSLV
IDRTEAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMV
LESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSESCVHCNGRG
VIVHMDQASAAGGGGGGGKRKKKKSAAGAGQQPAEQEPAAVAGAEAEPEEVTEAAAEIAA
EATQPKPLPEPVFAADEELYSSAAEAEAAATRGRTRRRATRKVSAPAGAPKTAKEPEGVV
VVVADEPREAAEPEPEAATEAPASASAEELEAPIEGVPAPRTRRRATRKVSAPAGSPTGS
EEAAVVVVSGSSAEPEPQSEPEARSESEAAPESASAEGEAETEAPAKKRTARKAAKKAPA
KKATAKKTAEKKTAAKKTAAKKTTAKKTTAKKTAAKKTAAAEQQTPQSVSAAADD
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atcgcgccgcgtgccgcggcgcccggggaatccatcgagagcacgcccagcgacactctg
ccgccgcgccgccgccgtgcggcgtcccgcccggcgggcccaccgcccggtgcggtgagc
gaggccgaggtcaccacgtcctccgcaccggccataccggccgatcagatcgccgtcgcc
gaggccgcttccgagcccgtcgccgccggtgccgccatggccaccgcgtccgcggccggg
gccgaccccgaatccgccgctccacccgcccgtacgcggcgccgggtggcgcgcaaggcg
acgtccccggcgggttcgccggaggccgcggagaccgtggtgtcggccgatgccggacgc
ggcggcgaggagaccgaagccgccgcggagcccgtgtcggaagccgtgacggaagccgcc
cccgaggccgctccgcccgcccgtacgcgccgccgtgcgacccgtaaggtgaccgctccg
gccggtgcgccggcggaggcggaggtcgtggagccggaggagcccgaagagctcgaggag
cccgaggagtccgcggccgtttctgaagccgaggccgaggcggagaccgtgcccgcggcg
gccgcccgttcccgccgtcgtgcgacccgtaaggcgacggcccccgccggtccgccgcag
gcggagaccgccgacgcggacgcgtcgtccacggcggccgctggtggcagtggcgacgag
accacggccccagcggcagtcgcggtcgatgccccggccgacgaggccccgcgtacccgt
acgcgccgtcgtacgacccgtaagacgaccgctccggcggacgcccccgtggagccggag
cgggccgaggagcccgcggccgctgcggaggccgaggccgaggcggagaccgtgcccgcg
gcggccgcccgtacccgccgccgtgcgacccgtaaggcgaccgctcccgccggagcgccc
gcggaggccgaggcttccgaagagcccgccgccgaggagcagcggggcgagagccccgag
gagcccgccggtgcgcaggccgaggaggcgccgcgcacccgtacccgccgccgtgcagct
cggggcaccgcccccgccgccgaggagccgagcggcgccccggaggcgcagggcgccgag
cccgaggccggggccccggccgccgaggccgcttccgagccggagcccgcgccccgttcg
cggcgccgggcggcccgcccgccgacagccgtgttccaggcgcccgtcttcaccgagccc
gtcttccagacgccggagagcgccgccgccgaggccgccgccgcgctggagggcgccgac
gacgcggacgcggacgaggacgagccgaccgccgaggccaccgaggccgtcgagcccgag
acgtccgccggccgccgtcggcgccgccgccgtggtgcgcccgccgaggagcacccggag
cccgaggagaccgaagccgccgagtccgagaccgagtccgagaccgaggccgagtccggc
caccccgagggcgagcacggcgaggaggagccgggcgaccgtccggcccgtcgccgccgc
cgtggcggacgtcgccgccgccggggcgagaccgccgagggcgctgagggcgccgagggg
cgttccgagggcgagaccggtgagcgctacgaggacgagtcggccgccgacggcgagggc
gccgaggagcagggcgagggccgcgacgagtcgggcgccgagtccggtgagtccggcggc
tccaccagcagccgccgtcgccgtcgccgccgccgtcgcagcggcgaggccgccgaggcg
gagacgacgggcggcgacgacccggagcgtacggtcgtcaaggtccgcgagccccgggag
cggcgcggcaaggaagccgagtccagcgccgacgaggtgcagtcgatcaaggggtcgacg
cgtctggaggccaagaagcagcgccgccgcgagggtcgtgagcagggccgccgccgggtc
ccgatcatcaccgaggccgagttcctggcccgccgcgaggcggtcgagcgggtcatggtc
gtccggcagaacggcgatcgcacccagatcggcgtgctggaggacaacgtcctcgtcgag
cacttcgtcaacaaggagcaggcgaccagctacgtcggcaacgtctacctgggcaaggtc
cagaacgtgctgccgtcgatggaggccgccttcgtcgacatcggcaagggccgcaacgcc
gtgctgtacgcgggcgaggtgaacttcgaggcgctggggctcgccaacgggccgcgccgc
atcgagaccgcactgaagtccggccagtccgttctggtgcaggtgaccaaggacccgatc
ggccataagggcgcccggctgaccagccaggtctccctcccgggccgctatctggtctat
gtgcccgagggctcgatgaccggtatcagccgcaagctgcccgacaccgagcgggcgcgg
ctgaagcagatcctcaagaagatcgtccccgaggacgcgggcgtgatcgtccgcaccgcc
gccgagggcgcgagcgaggacgagctctcccgcgacgtcgcccggctccaggcgcagtgg
gaggagatcaagaagaaggcgaagaacggcggcgccccgtcgctgctctacggcgagccc
gacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttctccaaggtgatcgtc
agcggtgacgacgcctggcagaccatccacggctatgtctcgcatgtggcgcccgacctc
gccgaccggctccagaagtggacctcggacgtcgacgtcttcgccacctaccggatcgac
gagcagctgatgaaggcgctggaccgcaaggtctggctgcccagcggcggttcgctggtg
atcgaccggaccgaggcgatggtcgtcatcgacgtcaacaccggcaagttcaccggtcag
ggcggcaacctcgaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtg
cgccagctgcggctgcgcgacctcggcggcatcatcgtgatcgacttcatcgacatggtg
ctggagtccaaccgcgatctggtgctgcgccgactgctggagtgcctgggccgggaccgt
acgaagcaccaggtggcggaggtcacctcgctcggactggtccagatgacccgtaagcgg
gtcggccaggggctgctggagtccttctccgagtcctgtgtgcactgcaacggccgcggc
gtgatcgtccacatggaccaggcgtcggccgccggtggcggtggcggcggtggcaagcgc
aagaagaagaagtccgcggccggtgccggtcagcagccggccgagcaggagccggccgcc
gtggccggggcggaggccgagcccgaggaagtcaccgaggcggcggccgagatcgcggcg
gaggccacccagccgaagccgctgcccgagccggtcttcgcggccgacgaggagctgtac
agcagcgccgcggaggccgaggccgccgcgacccgtgggcgtacccgccgccgtgccacc
cgtaaggtgtccgccccggcgggcgccccgaagaccgccaaggagcccgagggcgtggtg
gtcgtggtggccgacgagccgagggaagcggccgagccggagccggaggcggccaccgag
gcccccgcttccgcttccgccgaggagctggaggccccgatcgagggcgttcccgcgccg
cgtacgcgccgccgtgcgacccgtaaggtgtccgcccccgcgggctcgccgacgggttcc
gaggaggcggccgtggtggtcgtgagcgggtcttcggccgagccggagccgcagtccgag
ccggaagcgcggtccgagtcggaggcggcgcccgagagcgcgtccgccgagggcgaggcc
gagaccgaggctccggcgaagaagcggaccgcccgtaaggccgccaagaaggctccggcc
aagaaggcgacggccaagaagaccgccgagaagaagacggcggcgaagaagacggccgcc
aagaagaccacggccaagaagacgaccgccaagaagacggcggcgaagaagaccgcggcg
gcggagcagcagactccgcagtcggtctcggcggcggccgacgactga
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