Streptomyces autolyticus: BV401_24485
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Entry
BV401_24485 CDS
T04980
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sauo
Streptomyces autolyticus
Brite
KEGG Orthology (KO) [BR:
sauo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sauo03019
]
BV401_24485
Enzymes [BR:
sauo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BV401_24485
Messenger RNA biogenesis [BR:
sauo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BV401_24485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
AAA_16
NACHT
SLFN-g3_helicase
ResIII
T2SSE
AAA_30
AAA_11
SRP54
NTPase_1
TsaE
PhoH
Motif
Other DBs
NCBI-ProteinID:
AQA13119
LinkDB
All DBs
Position
complement(6048647..6052645)
Genome browser
AA seq
1332 aa
AA seq
DB search
MSTTPAPALPALLERLPELMLRDQQRLGRRLDGARRIRKPEARAAVLGEVAEEITRAELR
VADRRAAVPAVTYPEELPVSQKRDAILEAVRDHQVVIVAGETGSGKTTQIPKICMELGRG
VKGLIGHTQPRRIAARTVAERIAEELRSPLGESVGWKVRFTDQVSQDTHVKLMTDGILLA
EIQTDRELRQYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFSRH
FGDAPIVEVSGRTYPVEVRYRPLLEEGGEDSDRDQITAICDAVDELQAEGPGDILVFLSG
EREIRDTADALNKKKLPVTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPG
IRYVIDPGTARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYSEDDFLT
RPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDRRNIKDGIQLLEELHALDGKQ
KDPRKRLTQVGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPSDKQQ
QADQQHARFKDESSDFLAFLNLWKYVRERQKELSSSAFRRMCRHEYLNYLRIREWQDIYS
QLRTVAKTMDIHMSEQDAAPDRVHQSLLAGLLSHIGLRNTGVEGGKDSGKDAGRNAGREG
GKSTAKNEYVGARSAKFAVFPGSALFKKPPHWVMSAELVETSRLWARVNAKIEPEWIEPL
AQHLVKRTYSEPHWEQKQAAVMAFERVTLYGVPIVAQRKVNYGRIDPETSRDLFIRNALV
EGDWRTHHQFFLDNRKLLGEVEELEHRARRRDILVDDETLFDFYDQRIPEHVVSGAHFDS
WWKHKRREEPELLNFEKSMLINERAQDVTKDAYPDSWRQGKLKFRVTYQFEPGADADGVT
VHIPLQVLNQVTADGFDWQIPGLREDLVTELIRSLPKPVRRHYVPAPNYAKRFLESAVPL
QGPLTAALERELHRMVGVRIEPEDWDLAKVPDHLKITFRVVDERRRKLAEDKDLEALKLR
LRPKTRAAISKAFESSKEAVGIEQRGGLTRWTVGTLPRTFETRRGGQPVKAYPALVDEGA
SVAVRLFDTEAEQREAMWRGTRRLILLQLPSNPAKFVQGKLSNQAKLALSSSPHGSVQAL
FDDCVSAAADRLIATRGGPAWDEESFRKLFDAVRTDIMDATLDTVRKVQEVLAAWQSCER
RLKATSSPVLLPSLTDIREQLSELITPGFVTAHGVRRLPDLMRYLVAVDRRLQQLPGNAD
RDRARMAKVREMRDEYAWLLEQFRPGRPVPQEALEIRWMIEELRVSYFAHALGTAYPVSD
KRIVKAIDAAAP
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacgcctgcccccgccctgcccgccctgctggagcggctgcccgagctgatg
ctgcgcgaccagcagcggctggggcgccgactcgacggtgcgcgccggatccgtaaaccc
gaggcccgagcggccgtgctcggcgaggtcgccgaggagatcactcgtgccgagctgcgg
gtcgcggaccgccgcgccgccgtaccggccgtcacctatccggaagagctgccggtcagc
cagaagagggacgcgatcctcgaggccgtccgggatcaccaggtggtgatcgtcgcgggt
gagaccggctccgggaagaccacccagattccgaagatctgtatggagctggggcgcggc
gtcaagggccttatcggccatacgcagccgcgccgtatcgcggcccgtacggtggccgag
cgcatcgccgaggagctgcggtcgccgctgggcgagtccgtcggctggaaggtccgcttc
accgaccaggtgagccaggacacccacgtcaagctgatgaccgacggcattctgctcgcc
gagatccagaccgaccgcgagctgcgccagtacgacacgatcatcatcgacgaggcccat
gagcgcagcctcaacatcgacttcctgctcggctatctggcccagctgctgccccgccgc
cccgacctcaaggtcgtgatcacctccgccaccatcgaccccgagcgcttctcccgccat
ttcggcgacgcgccgatcgtcgaggtcagcgggcgtacgtatccggtcgaggtgcgctac
cgcccgctgctggaggagggcggcgaggacagcgaccgcgaccagatcaccgcgatctgc
gacgcggtcgacgagctccaggccgagggccccggcgacatcctggtcttcctctccggc
gagcgggagatccgcgacaccgccgacgcgctgaacaagaagaagctcccggtcaccgag
gtgcttccgctgtacgcccggctgtcgcacgccgagcagcaccgggtcttccaaagacac
accggccgccggatcgtgctggcgacgaacgtcgccgagacctcgctgaccgtccccggt
atccgctatgtgatcgacccgggcaccgcgcggatctcccgctacagccatcgcaccaag
gtccagcggctgcccatcgagccgatctcgcaggccagcgccaatcagcgcaagggccgc
tgcggccgtaccagcgacggcatctgcatccggctgtactccgaggacgacttcctcacc
cgcccggagttcaccgacgccgagatcctgcggaccaacctggcctccgtcatcctccag
atgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggaccgc
cgcaacatcaaggacggcatccagctcctggaggagctgcacgccctggacggcaagcag
aaggacccgcgcaagcggctcacccaggtcggccggaagctggcccagcttccggtggac
ccgcggctggcccggatggtgctggaggcggaccgcaacggctgtgtccgtgaggtcatg
gtgatcgcggcggcgctgtccatccaggacccgcgcgagcgcccctcggacaaacagcag
caggcggatcagcagcacgcccgcttcaaggacgagtccagcgacttcctggccttcctc
aatctgtggaagtacgtccgggagcggcagaaggagctgtcctcctcggccttccgccgg
atgtgccgccatgagtacctcaactacctgcgcatacgcgaatggcaggacatctacagc
cagctgcgcacggtcgccaagaccatggacatccatatgtccgagcaggacgcggcgccc
gatcgcgtccatcagtcgctgctggccgggctgctgtcgcacatcggcctcaggaacacc
ggggtggagggcgggaaggacagtgggaaggacgccgggcggaacgccggccgggagggc
gggaagagcacagccaagaacgagtacgtgggcgctcggagcgccaagttcgcggtcttc
cccggctcggcgctgttcaagaagccgccgcactgggtgatgtcggcggagctggtggag
acctcccggctgtgggcgcgggtcaacgcgaagatcgagccggagtggatcgagccgctc
gcccagcacctggtaaaacgcacctacagcgaaccgcactgggagcagaagcaggccgcg
gtgatggcgtttgagcgggtcacgctctacggggtgccgatcgtcgcccagcggaaggtc
aactacggccggatcgaccccgagaccagccgcgatctgttcatccgcaacgccctggtg
gagggcgactggcgcacccaccaccagttcttcctcgacaaccgcaagctgctgggcgag
gtcgaggagctggagcaccgggcccggcgccgcgacatcctcgtggacgacgagacgctc
ttcgacttctacgaccagcggatccccgagcatgtggtgtccggtgcccacttcgactcc
tggtggaagcacaagcgacgcgaagagccggagcttctcaacttcgagaagtcgatgctc
atcaacgagcgggcgcaggacgtcaccaaggacgcctatccggactcctggcgccagggg
aagctcaagttccgggtgacctaccagttcgagccgggggcggacgcggacggtgtgacc
gtccacatcccgctccaggtgctgaatcaggtcaccgcggacggattcgactggcagatt
ccggggctgcgcgaggatctggtcaccgagctgatccgctcgctgcccaaaccggtccgc
cggcactacgtcccggcgcccaactacgccaagcgcttcctggaaagcgctgtccccctc
caggggccgctgacggcggcgctggagcgcgagctccaccggatggtgggcgtacggatc
gagccggaggactgggacctggcgaaggtccccgaccatctgaagatcaccttccgggtg
gtggacgagcggcgccgcaagctggccgaggacaaggacctggaggcgctgaagctgcgg
ctgcggccgaagacgcgggccgcgatctccaaggcgttcgagtcctccaaggaggccgtg
gggatcgagcagcgcggcgggctgacccggtggacggtcgggacgctgccgcgcaccttc
gagacgcgccgcggcggccagccggtcaaggcgtatccggcgctggtcgacgagggcgct
tcggtggccgtacggctcttcgacaccgaggccgagcagcgggaggccatgtggcgcggg
acgcgccggctgatcctgctccagctgccctccaaccccgccaagttcgtccagggcaag
ctctccaaccaggccaagctggcgctctccagcagcccgcacggcagtgtgcaggcgctc
ttcgacgactgcgtgtccgcggcggccgaccggctgatcgcgacccgtggcggcccggcc
tgggacgaggagtcgttccgcaagctcttcgacgccgtgcgcaccgacatcatggacgcc
acgctggacacggtccgcaaggtccaggaggtgctggccgcctggcagtcgtgcgagcgg
cggctcaaggccaccagcagcccggtgctgctgccgtccctcacggacatccgggagcag
ctctcggagctcatcacaccgggtttcgtgaccgcccacggcgtacggcggctgccggac
ctcatgcgctatctggtggccgtggaccggcggctccagcagcttccgggcaacgccgac
cgggaccgcgcccggatggcgaaggtgcgggagatgcgggacgagtacgcctggctgctg
gagcagttccggcccgggcgcccggtgccccaggaggcgctggagatccgctggatgatc
gaggagctgcgggtcagctacttcgcgcacgccctcggcacggcctatccggtgtccgac
aagcgcatcgtcaaggccatcgacgcggcggcgccgtaa
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