Streptomyces malaysiensis subsp. malaysiensis CGMCC0516: BV401_25430
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Entry
BV401_25430 CDS
T04980
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sauo
Streptomyces malaysiensis subsp. malaysiensis CGMCC0516
Brite
KEGG Orthology (KO) [BR:
sauo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sauo03016
]
BV401_25430
Enzymes [BR:
sauo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BV401_25430
Transfer RNA biogenesis [BR:
sauo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BV401_25430
Prokaryotic type
tRNA splicing ligases
BV401_25430
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AQA13269
UniProt:
A0ABM6HH42
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All DBs
Position
6267415..6268608
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AA seq
397 aa
AA seq
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MSYVEVPGARVPIRMWTDPSTVEGVAMEQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQTIPVGRGMHDDPVDPG
RLHAFPTGGWDDFWSRFGGVAEAVKFRQERAVKQMGSLGSGNHFIEFCLDDEGSVWLMLH
SGSRNIGKELAEYHIGEARKLPHNQDLVDRDLAVFIADTPQMAAYRHDLFWAQEYAKYNR
AIMMALFQDVVRKEFKKARPVFEPVISCHHNYVAEERYEHMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVRGLGNEESFNSASHGAGRKMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVARLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtcgaggtgcccggcgctcgggtgccgatccggatgtggaccgacccttcg
acggtcgagggcgtggccatggagcagctgcgcaatgtggccacgctgccctggatcaag
ggcctcgccgtgatgccggatgtgcattacgggaagggtgccacggtcggctcggtgatc
gcgatgcagggcgcggtgtgcccggccgcggtgggtgtggacatcggctgcgggatgtcg
gcggtcaagacgtcgctgaccgcgaacgaccttccgggggatctctcgcggctgcggtcc
aagatcgagcagacgatcccggtggggcgcggaatgcacgacgacccggtggacccgggg
cggctgcacgcgtttcccaccgggggctgggacgacttctggagccggttcgggggagtg
gccgaagcggtcaagttccgccaggagcgggccgtcaagcagatgggttcgctcgggtcc
ggcaaccacttcatcgagttctgcctcgacgacgagggttcggtctggctgatgctgcac
tccggctcccgcaacatcggcaaggagctggccgagtaccacatcggcgaggcccggaag
ctgccgcacaaccaggatctggtcgaccgcgacctggccgtcttcatcgcggacaccccg
cagatggcggcgtaccggcacgatctgttctgggcgcaggagtacgcgaagtacaaccgc
gcgatcatgatggcgctcttccaggacgtggtgcgcaaggagttcaagaaggcccgcccg
gtcttcgagccggtgatcagttgccaccacaactacgtcgccgaggagcgctacgagcac
atggaccttctcgtgacccgtaagggcgccatccgcgccggcagcggggactacgggatc
atcccgggctcgatgggcaccggttcgtacatcgtgcgcggtctggggaacgaggagtcg
ttcaactcggcctcgcacggcgcgggccggaagatgagccgtaacgcggcgaagaagcgc
ttctcgacccgggatctggaggagcagacgcggggcgtggagtgccgtaaggactccggc
gtcgtcgacgagatccccggggcgtacaagccgatcgagaaggtcatcgaccagcagcgg
gacctcgtcgaggtggtggcgaggctcaagcaggtcgtgtgtgtgaagggctga
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