Shewanella avicenniae: JYB87_00050
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Entry
JYB87_00050 CDS
T07845
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
savi
Shewanella avicenniae
Pathway
savi00071
Fatty acid degradation
savi00280
Valine, leucine and isoleucine degradation
savi00310
Lysine degradation
savi00362
Benzoate degradation
savi00380
Tryptophan metabolism
savi00410
beta-Alanine metabolism
savi00640
Propanoate metabolism
savi00650
Butanoate metabolism
savi00907
Pinene, camphor and geraniol degradation
savi00930
Caprolactam degradation
savi01100
Metabolic pathways
savi01110
Biosynthesis of secondary metabolites
savi01120
Microbial metabolism in diverse environments
savi01200
Carbon metabolism
savi01212
Fatty acid metabolism
Module
savi_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
JYB87_00050 (fadB)
00650 Butanoate metabolism
JYB87_00050 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
JYB87_00050 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
JYB87_00050 (fadB)
00310 Lysine degradation
JYB87_00050 (fadB)
00380 Tryptophan metabolism
JYB87_00050 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
JYB87_00050 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
JYB87_00050 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
JYB87_00050 (fadB)
00930 Caprolactam degradation
JYB87_00050 (fadB)
Enzymes [BR:
savi01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
JYB87_00050 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
JYB87_00050 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
JYB87_00050 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
JYB87_00050 (fadB)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
AAA_SpoVK_N
Sdh5
Motif
Other DBs
NCBI-ProteinID:
QSX33701
UniProt:
A0ABX7QRX2
LinkDB
All DBs
Position
complement(11970..14117)
Genome browser
AA seq
715 aa
AA seq
DB search
MLYQSSTVKVTQQNGIAHLLFDREDSAINKFDRQTLNDFNQALDSIVNADPQLQGLVLSS
AKDSFIVGADITEFLTLFAEEDAQLYQWLLSANAIFNKLEDLPFPTVAAVNSFALGGGCE
TVLATDFRVASDDLRIGLPETKLGIIPGFGGTVRLPRLIGVDNALELITSAKECRSTEAL
SLGLVDAVVNKEQLVESANALLALAINEEIDWQARRQQKQQPLSLSKLEQMMSFNVAKGL
VYAKAGKHYPAPMAALTAIEKSAADTREHALVNEHHAFMSLAKTATAKSLIQLFLNDQYV
KSLAKRNVSLARPTGNAAVIGAGIMGGGIAYQSAVKHVPVVMKDINANAIQLGLNEASKL
LQKQIERGRLTPEKMAQVLNSIQPTLNYDAIEMSDIVVEAVVENPKVKALVLADVEKHVS
DNAVITSNTSTISINQLSLALKHPERFCGMHFFNPVHRMPLVEVIKSSVTSDETVATVVG
YATQMGKTAIVVNDCPGFFVNRVLFPYFAGFCQLVADGADYTVIDKVMEKVFGWPMGPAY
LLDVVGIDTAHHAQQVMAEGFPERMAVTYQDAIHKLFTASCFGQKTGSGFYSYSKDKRGK
SVKTPCAELANLTDSPAAQFSEDEIIARMMIPMINETLLCLDEGIVQSAAEADLALIYGL
GFPPFRGGVFSYLEQMGLPKYIDWAANFSHLGPLYQVPSSVRLRIERGEHFYQHA
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgctctatcaaagttcaacggtaaaagtgacacagcaaaacggtattgcgcatctgctg
tttgatcgtgaagacagcgcgattaataagtttgatcggcaaacccttaatgactttaat
caagcgcttgatagcatcgtcaatgcagatccgcagctgcaagggcttgtgctcagttct
gctaaagacagttttattgttggtgcggatattaccgagtttttaacgctttttgccgag
gaagatgcgcaactctatcaatggctactaagcgcaaacgctattttcaataaactcgaa
gatctgccttttccaacagtcgctgccgtaaatagcttcgcgctcggtggcggctgtgaa
accgtacttgccaccgatttccgcgttgcgagtgatgacctgcgcattggccttcctgaa
accaagctgggcattattcccggattcggtggcacggtgagattgcctcggctcattggc
gttgataatgcgcttgagttgattacgtcagcaaaagagtgtcgcagtactgaggcgctg
tcattaggcttagtcgatgctgtagtcaataaagaacagcttgttgaaagcgccaatgcg
ctactcgcgttggcaataaatgaggagattgattggcaggcgcggcggcagcaaaagcag
caaccgctcagtttgagtaagttagagcagatgatgtcgtttaatgtcgccaaagggctc
gtttacgccaaagccggtaagcactatccggcaccgatggctgcactaacggcgatagag
aaaagtgctgcagatactcgcgaacacgcgttagtaaatgaacatcatgcgtttatgagt
ttagccaaaacagcaaccgcaaaatccctcatccaattattcttgaacgatcagtacgtc
aagtcactcgccaaaagaaatgtaagtttggcgcgcccaacaggcaacgccgccgtgatt
ggcgcaggcattatgggagggggcattgcttaccaaagtgcggtgaagcatgtgccagta
gtaatgaaagatataaatgccaatgcgattcagctgggactcaacgaggcaagcaagctg
ctacaaaaacagattgaacgtggacgcttaacaccagagaaaatggcgcaggtgctcaac
agcattcaacccaccttgaattacgatgccattgaaatgagcgatattgtggttgaagct
gtggttgaaaaccccaaagttaaagcgcttgtacttgctgatgttgaaaagcatgtgagc
gacaatgcggtcattacctctaacacatccacaatctctatcaatcagctgtcgcttgct
ttaaagcatcctgaacgattctgcggcatgcatttttttaatcctgttcatcggatgccg
ttagttgaagtgatcaaatcaagtgtcactagcgacgagactgtcgcgactgtagtggga
tatgccacacaaatgggcaaaaccgcaattgtggttaatgactgcccaggctttttcgtt
aaccgggtgctattcccatatttcgccgggttctgccagctggttgcagacggcgcagac
tataccgttatcgacaaagtgatggaaaaagtgtttggttggccgatggggccggcatac
ttgttagatgtagtaggaatcgacaccgcccatcatgcccagcaagttatggctgagggg
tttcctgaacgaatggcggtgacttatcaagatgccattcacaagctttttacggccagt
tgttttggccaaaagaccggttcaggtttctacagctacagtaaagacaagcgtggtaag
tcagttaaaacaccatgtgccgaacttgctaatttgacagatagtcccgctgcgcaattt
tcagaagatgagattattgcacggatgatgatcccgatgattaacgaaacactcttatgc
cttgatgaaggcatagtgcagtccgctgccgaggccgatttggcgttaatttatggccta
ggatttccgccatttagaggtggtgtatttagctatcttgagcaaatgggattgccgaag
tatatcgattgggcggcaaactttagtcatcttgggccactttaccaagtaccaagttct
gttcgcctacgaatcgaacgtggcgaacacttttaccaacacgcttaa
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