Shewanella avicenniae: JYB87_01790
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Entry
JYB87_01790 CDS
T07845
Name
(GenBank) type II secretion system F family protein
KO
K02653
type IV pilus assembly protein PilC
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
savi02044
]
JYB87_01790
02035 Bacterial motility proteins [BR:
savi02035
]
JYB87_01790
Secretion system [BR:
savi02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
JYB87_01790
Bacterial motility proteins [BR:
savi02035
]
Pilus system
Pilus assembly proteins
JYB87_01790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T2SSF
PASTA
SdrD_B
DUF1673
Phage_holin_3_6
SecD-TM1
Motif
Other DBs
NCBI-ProteinID:
QSX34008
LinkDB
All DBs
Position
complement(399620..400891)
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AA seq
423 aa
AA seq
DB search
MATASSTRKRNGAKAKEKKQPTIYTFVWKGVNRDGKKSEGELRGATVAEIKQQLKNQGIN
PKTVTKKSAGLFSNENKKITAMDIAMVTRQIATMLSAGVPLVTSIELISRGHEKPKMRTL
LGTILSDVQSGIPLSDSLRPHRIYFDDLYVDLVAAGEHSGSLDIVFDRIATYKEKAEALK
SKIKKAMFYPAAVIVVAIAVTVLLLLFVVPQFEEIFSSFGAELPAFTQLIVNISRGLQST
WYIFLAAIVLAVWLFVRAHRNSQKFRDKIDELVLKIPVIGDILHKGAMARFARTLATTFA
AGVPLIDGLTSAAGASGNAVYRKSLMNVRTEVMAGMQMNVAMRTSKLFPDMLIQMVMIGE
ESGSLDNMLNKIANIYEMQVDDAVDALSSLIEPMMMVVIGGLVGSLIVGMYLPIFQLGNV
VSG
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgcctcttctacccgtaagcgcaatggcgcaaaagccaaagaaaaaaagcag
cccactatctatacctttgtttggaaaggtgtaaatcgcgacggaaaaaaaagtgaggga
gaactccgtggtgcgaccgttgcagaaattaagcaacagttaaaaaatcaaggaattaat
cctaaaactgtcaccaaaaagtccgcaggacttttcagcaacgagaataaaaaaatcacc
gcaatggacatcgcaatggtgacccgtcaaatagcaactatgctttctgccggggtgcct
ttggtgacttcgattgagcttatttcccgtggtcatgaaaaaccaaagatgcgtaccttg
ttagggacaattttgtcagatgtgcaatctggtattccgctttctgactcacttcgccct
cacagaatttatttcgatgatctatacgtagaccttgtcgccgcaggtgaacactctggc
tctttagatattgtatttgaccgtatcgccacctataaagagaaggcggaagcactgaaa
tcaaaaattaaaaaggcaatgttttatcctgcggccgtgattgttgtagccatcgcagtt
accgtattgctacttttgttcgttgtcccccagtttgaagaaatatttagcagttttggc
gctgagctacccgcatttacccaacttattgtgaatatttcgcgtggattacagagcact
tggtacatatttctagcagcaatcgtcctcgcggtttggttatttgtcagagcacatcgt
aattctcaaaagtttagagacaagattgatgaacttgtattaaaaatcccagtcattgga
gatattctgcacaaaggtgcaatggcacgatttgctcgcaccttggcaaccaccttcgcg
gcaggtgttcctttgattgacggcttaacctccgccgcaggagcatcaggcaatgccgtc
taccgtaagtctctcatgaatgtacgcactgaagtgatggctggtatgcaaatgaacgtg
gcaatgcgcacgtctaagctattcccagatatgttgattcagatggtgatgattggtgaa
gaatctggctctcttgataatatgcttaataaaattgctaacatctatgaaatgcaggtc
gatgatgccgtggatgccctatccagcctgattgagccgatgatgatggtggttattggc
ggtttggtcggtagcttaattgtcggcatgtatttgccgatattccagttgggcaatgtt
gttagcggctaa
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