Shewanella avicenniae: JYB87_02395
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Entry
JYB87_02395 CDS
T07845
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
savi03021
]
JYB87_02395 (rapA)
Transcription machinery [BR:
savi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
JYB87_02395 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
NCAB2
DASH_Dad2
Motif
Other DBs
NCBI-ProteinID:
QSX34117
UniProt:
A0ABX7QSV7
LinkDB
All DBs
Position
complement(548232..551138)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFALGQRWISDTESELGLGTVVQLEGRVVSLLFPATGENRTFARADAPLTRVIYNPGDL
VKSHEGWSLKIEQVTENNGLVFYSGVRDDNGEQCDLRETLLDHNIRFNKPQDRLFAGQID
RLDRFSVRYQAQQLRYRLATSSMLGLQGPRVGLIPHQLWIASEVGRRHAPRVLLADEVGL
GKTIEAGLIIHQQLMTGRAERVLILVPDTLRHQWLVEMLRRFNLRFAVFDEDRCVEAFAD
HDNPFYTEQLVICSIDLLRNKRRLDQALDADWDLLVVDEAHHLEWSADKPSRPYQVVDAL
SQVIPGVLLLTATPDQLGHESHFARLRLLDPNRFYDYEAFVREEQDYRQVAIASDAIASG
NRIPDEVIASLTELLAENDIMPALKLIQAQEVDSELREQARDELLQQLLDRHGTGRVLFR
NSRASVKGFPKRIFHAYPQEIPAQYQTALRVSGMMNRNLPQDAQVRLALSPEKIYQQFDE
NADAWWKFDPRVDWLIDFLKNHRSKKVLIIASQANTALALEEALRTREGILATVFHENMS
IIERDKAGAFFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQQNDVEIHLPYLNGSAQTTLLRWYHEGLNAFELTCPGGHELYKTHAEQLMQLLINEDE
DALATLLNQTHSQYKALKQAMEQGRDKLLELNSHGGRKAQALAEKLAEMDDNTDTIGSII
RLWDILGIDQEDRGENAVVLTPTEHMMFPTYPGLPEDGVTVTFDRDKALSRDDIALITLE
HPLVQTGIDLITGSETGSTAVALLKNKALPAGTLFLEMIYMADASAPKSSQLFRYLPATP
IRVLLDKDGNNLGTKVNYDQWNQQLSPVNRHIGSKLVNASQTLLHPLLDKGTQHAQIAME
QIVAQARSEMENSLNSELNRLEALQAVNPNIRDEELDYLRQLQSDLTGYLDNCQLRLDAI
RLVLVSHV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccctttgctttaggccaacgctggattagtgacactgaatcagagctgggattagga
actgtagtgcaactagaaggccgcgtggtgtcgctgctatttccggcgactggtgaaaac
cgtacttttgcccgcgctgatgcgccattaacacgggtcatttataacccgggcgattta
gtcaaaagtcacgaaggctggtcactcaagattgaacaagtgaccgaaaataatgggcta
gttttttactcgggtgttcgcgatgacaatggcgagcaatgcgatttacgcgaaaccctg
ctcgaccataatatccgttttaataagccacaagaccgcttgtttgcggggcaaatcgat
cggttagatcgcttcagtgtgcgttatcaagcacagcaactgcgttatcgcttagctacg
tccagcatgttgggcttgcaaggcccgcgagtggggctgatccctcaccaactgtggatt
gccagtgaagtcggtcgtcgtcatgcgccacgggtattattggccgacgaagtaggcttg
ggtaaaaccattgaagccggtttgatcatccaccagcaactgatgactggccgcgctgag
cgggtgctgattttggtgcctgatactttacgccaccaatggctagtggagatgctgcgc
cgctttaacctgcgcttcgccgtgtttgatgaagaccgctgcgttgaagcctttgccgac
cacgataatccgttctacaccgaacagctggtgatctgctccatcgacttactgcgcaat
aaacgccgcttggatcaagcgctggatgccgattgggatctgttggtggtggacgaagcg
catcacttggaatggtcagcggacaaaccaagccgcccttatcaggtggtggatgcgtta
tcacaagtgatccccggcgtactgttgctgacggcaacacccgatcaattgggtcacgaa
agtcactttgcccgtctgcgcctactcgatccaaaccggttttatgactacgaggccttt
gtgcgggaagagcaagactatcgccaagtagcgattgcctccgatgcgattgcctcgggc
aaccgaattcctgatgaggtgatcgccagcctgactgagttgctggctgaaaacgacatt
atgccagccttgaagctgatccaagcgcaagaagtggacagcgaactgcgcgaacaagcc
cgtgatgagctgctgcaacaattgctggatcgccacggcactggccgggtgctgttccgt
aatagccgcgcatcagtaaaaggcttcccgaaacgtattttccacgcctatccgcaagag
atccccgcgcaatatcaaaccgcgttgcgcgttagcggcatgatgaaccgcaatctgccg
caggatgcgcaagtacgcttggcgttgagcccagagaaaatttaccagcaatttgatgaa
aatgccgatgcctggtggaagttcgacccacgggtagattggctgattgatttcctcaaa
aaccatcgcagcaaaaaagtgctgatcatcgcctcacaagccaatactgccttagcgttg
gaagaagcactgcgcacccgtgaagggattttggcgaccgtgttccatgagaacatgtcg
attattgagcgcgataaagcgggcgctttcttcgcccaagaggaaggtggcgcacaagcg
ctgatctgttctgaaatcggttccgaaggacgtaacttccagtttgccagccatctggtg
ttgttcgacctgccattgaaccctgatttgttggaacaacgtatcggtcgtttggatcgt
atcggccaacaaaatgatgtcgaaattcatctgccataccttaatggctcagcgcaaact
accctactgcgttggtatcacgaaggtttaaatgcgtttgaactcacatgcccaggtggc
catgagttgtataaaactcacgccgagcagttgatgcaattgctgattaacgaggatgaa
gacgcgctggcaacactgctgaatcaaacccatagtcagtacaaagcgctcaaacaagcg
atggagcaaggccgcgataagctgttggaattgaactctcatggtggccgtaaggcacaa
gccttagccgaaaaactggccgagatggacgacaataccgacactatcggtagcatcatc
cgtttgtgggatattctggggatcgatcaagaagatcgcggcgaaaacgccgtggtgcta
acaccgaccgaacatatgatgttcccaacctacccaggcttgccagaagatggtgtcaca
gtgactttcgaccgtgataaagcgctgtcgcgtgatgatattgccctgattacgctggag
catccgctggtacaaaccggtatcgatttgatcaccggctctgaaaccggcagcactgcg
gtggccttgttgaagaacaaagcgctgccagcgggcactctgttccttgagatgatttac
atggccgacgcctcggcgccgaaatcatcgcagctgttccgttatctgccagcaacgcct
atccgcgtattactggataaagacggcaacaatctgggcaccaaggttaactatgatcag
tggaaccaacagctgagcccagtgaatcgccatattggcagcaaactagttaacgcctcg
caaaccctgctgcatccattgctggacaaaggcacccagcatgcgcaaatcgcgatggaa
cagattgtggcgcaagcccgcagcgaaatggaaaacagcttgaacagcgagctaaatcgc
cttgaagcattgcaagcagttaacccgaatattcgtgatgaagagttggactatctgcgc
caactgcaaagcgatttaaccggttatctggataattgccagctgcgactcgatgcgatt
cgtttagtgctggtcagccacgtataa
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