Shewanella avicenniae: JYB87_03525
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Entry
JYB87_03525 CDS
T07845
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
savi
Shewanella avicenniae
Pathway
savi02024
Quorum sensing
savi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYB87_03525 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JYB87_03525 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
savi03019
]
JYB87_03525 (hfq)
03036 Chromosome and associated proteins [BR:
savi03036
]
JYB87_03525 (hfq)
Messenger RNA biogenesis [BR:
savi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
JYB87_03525 (hfq)
Chromosome and associated proteins [BR:
savi03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
JYB87_03525 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
QSX34332
UniProt:
A0ABX7QS99
LinkDB
All DBs
Position
816678..816956
Genome browser
AA seq
92 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPFNMGSGSHQGGQAGYNGQHEDSSEQ
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatcattacaagacccattcttgaatgcgttacgccgtgaacgtgtt
cctgtttctatctatctggttaacggcattaaattgcaagggcaggtagagtcttttgat
cagtttgttattttgctgaaaaacacagtcagtcagatggtgtacaaacatgccatctca
acagtggtgccttctcgtccattcaatatgggcagtggcagccatcaaggcggtcaagct
ggttacaacggccagcacgaagacagcagcgaacagtaa
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