KEGG   Shewanella avicenniae: JYB87_03525
Entry
JYB87_03525       CDS       T07845                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
savi  Shewanella avicenniae
Pathway
savi02024  Quorum sensing
savi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:savi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JYB87_03525 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    JYB87_03525 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:savi03019]
    JYB87_03525 (hfq)
   03036 Chromosome and associated proteins [BR:savi03036]
    JYB87_03525 (hfq)
Messenger RNA biogenesis [BR:savi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     JYB87_03525 (hfq)
Chromosome and associated proteins [BR:savi03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    JYB87_03525 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QSX34332
UniProt: A0ABX7QS99
LinkDB
Position
816678..816956
AA seq 92 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPFNMGSGSHQGGQAGYNGQHEDSSEQ
NT seq 279 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatcattacaagacccattcttgaatgcgttacgccgtgaacgtgtt
cctgtttctatctatctggttaacggcattaaattgcaagggcaggtagagtcttttgat
cagtttgttattttgctgaaaaacacagtcagtcagatggtgtacaaacatgccatctca
acagtggtgccttctcgtccattcaatatgggcagtggcagccatcaaggcggtcaagct
ggttacaacggccagcacgaagacagcagcgaacagtaa

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