Shewanella avicenniae: JYB87_03875
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Entry
JYB87_03875 CDS
T07845
Symbol
rimK
Name
(GenBank) 30S ribosomal protein S6--L-glutamate ligase
KO
K05844
ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
savi03009
]
JYB87_03875 (rimK)
Ribosome biogenesis [BR:
savi03009
]
Prokaryotic type
ribosomal protein modification factors
JYB87_03875 (rimK)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RimK
Zn_protease
Rimk_N
GSH-S_ATP
ATPgrasp_ST
ATP-grasp_3
Dala_Dala_lig_C
R2K_3
Motif
Other DBs
NCBI-ProteinID:
QSX34399
LinkDB
All DBs
Position
complement(892654..894054)
Genome browser
AA seq
466 aa
AA seq
DB search
MKQSIEPKIVIGSDEWCAFPSLNIPAIKARVDSGAKTSSLHAINIQPFSRNGEAWVSFEV
HPIQDNRKVTVHCEAKVIDQRIIKSSSGDREKRLVIRVPLAMGEQLWDVEVTLTNRDSMG
YRMLLGREAMHGRTLVDPAGHCLLGERLSDQLATLYRAPEIRTTGLKIGLLASNPNLYSN
RRIIEAAESRGHEIQFFNIKNCYMKLDATRPEIHYRGGLVLNELDAVIPRIRPSMTFYAC
TLLRQFESLGIYCLNSSTAIAQSRDKLRALQLLLDNGLDIPTTGFANSPLDTGDLINMVG
GAPLIIKLLEGTQGKGVVLAETRKAAESVINAFKSLNANILVQEFIKESSGKDLRCFVVD
GKVVASIQRVAAPGEFRANIHQGGRAELIKITPEERRIAIKAAKAMDLKVAGVDLIRSNK
GPLLLEVNSSPGLEGIETATNEDIASKMIIAIEKQLAGKKKAETSS
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagagcattgagccgaaaattgtgatcggcagcgatgagtggtgcgcgtttccc
tcgcttaacattcctgccattaaggcacgcgtggattccggcgcaaaaacctcatctttg
cacgccatcaatattcagccgttctcccgtaatggcgaagcatgggtctcgtttgaggta
caccccattcaagacaaccgcaaagttacggttcattgcgaagcaaaagtgatcgatcaa
cgcatcatcaagagctctagcggcgaccgcgaaaagcgcttagtgatccgtgtgccattg
gcaatgggtgaacaactgtgggatgtggaagtcaccctcaccaaccgtgacagcatgggt
tatcgcatgctgctcgggcgtgaagcgatgcatggtcgcaccttggtcgatcccgcaggg
cactgcctgttgggtgagcgcttgtcagatcaattggcaaccctttaccgcgcgccagag
atccgcaccacagggctgaaaattggcttactggccagcaacccaaacctttacagcaac
cgccgtattattgaagcagcggaaagccgtggccatgaaattcagttttttaatatcaaa
aactgctacatgaaactcgatgcgacccgcccagagatccactatcgcggcggcttagtg
ctcaatgagttggacgcggtgatcccgcgcattcgtcccagcatgaccttttatgcctgt
accctactgcgccagtttgaatctttgggtatctactgtttaaacagctcaaccgccatt
gcccagtcacgcgataagttgcgcgccctgcaattgctgctggataacggcctagatatt
cccaccactggttttgctaattcaccactagatactggcgatttgattaatatggtgggt
ggcgcaccgctgatcatcaagttactggaaggtactcagggtaaaggcgtggttctggca
gaaacccgcaaggccgcagagagcgtgatcaacgcgttcaaaagcctcaacgccaacatt
ctggtgcaggaatttattaaagaatcgagcggcaaagatctgcgctgctttgtggtagat
ggcaaagtggtggcatcaattcaacgcgttgccgctccgggcgagttccgcgctaacatc
caccaaggtggccgtgcagaactaatcaaaatcacccctgaagaacgccgcattgccatt
aaggccgccaaagcgatggatcttaaagtcgccggggtcgatttaattcgctccaataaa
gggccattgctgcttgaggtcaattcatcgccgggtcttgaaggcattgaaaccgctacc
aatgaagatatcgcttctaagatgattatcgcgattgaaaagcaacttgcaggcaagaaa
aaggccgaaacttcatcataa
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