Shewanella avicenniae: JYB87_04530
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Entry
JYB87_04530 CDS
T07845
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
savi03016
]
JYB87_04530 (truB)
Enzymes [BR:
savi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
JYB87_04530 (truB)
Transfer RNA biogenesis [BR:
savi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
JYB87_04530 (truB)
Prokaryotic type
JYB87_04530 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
QSX34521
LinkDB
All DBs
Position
1048400..1049350
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AA seq
316 aa
AA seq
DB search
MARRPKGRFIDGIVLLDKPTGESSNHALQQVKRIFNAAKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTREINFSQAQLDAALESFRGDTMQ
TPSMFSALKYQGQPLYKYAREGKTVPREARPITVYELNFIGLEGDELTLDIRCSKGTYIR
TIIDDLGEQLGCGAHVIMLRRTEVADYPTDKMVTLEQLRAITEQEKGSLAALYSLLDALL
LPMDTAVADMPECHLPDDAVAYVMHGNPVRFNGPAAGTLVRITHGEQHQFIGVGSMTDDG
QLAPKRLIVMPEKTDI
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacgaccgaaaggccgttttatcgatggcattgtgttattggataagcctacc
ggcgagagctccaatcacgcgctgcaacaagtgaagcgaatttttaacgctgcgaaagcg
ggtcataccggcgccttagatccattagcgaccggtatgctgcctatctgtttgggcgaa
gccaccaagttttcgcagcatctgctcgattctgataagcgttatttggtcaccgcaaaa
cttggtcagcgtactgataccagtgactctgacggtgaagtggtgcaaacccgtgagata
aacttcagccaagcccagcttgatgccgccttggagagttttcgcggtgatacgatgcaa
acgccatcgatgttctctgcgctcaagtaccaaggtcagccgctgtataaatatgcgcgt
gaaggtaagaccgtgccgcgtgaagctcggcctattacggtttatgagctgaattttatt
ggccttgaaggcgacgagctgacgctggatattcgctgctctaaaggcacctatattcgc
accattatcgatgatttaggtgagcaactgggctgcggcgcacacgtgattatgttacgc
cgtaccgaggttgctgattacccaacggataaaatggtgacccttgagcaattacgggcg
attacagagcaagaaaaaggctctctagccgcactatatagtttgcttgatgcgctgctt
ttgccgatggataccgcagtggcggatatgccagagtgccatttgcccgacgacgcggtg
gcgtatgtgatgcacggtaatccggtccgctttaacgggccagccgccggcacgctggtg
cgcattacccacggcgaacagcatcaatttatcggcgtgggatctatgaccgacgatggt
caacttgcaccaaaacgtttaattgtaatgcctgaaaaaactgatatctaa
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