Shewanella avicenniae: JYB87_04780
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Entry
JYB87_04780 CDS
T07845
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_04780 (phrB)
Enzymes [BR:
savi01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
JYB87_04780 (phrB)
DNA repair and recombination proteins [BR:
savi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
JYB87_04780 (phrB)
Prokaryotic type
JYB87_04780 (phrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
QSX34568
LinkDB
All DBs
Position
1101469..1102896
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AA seq
475 aa
AA seq
DB search
MSQATVYIWFRQDLRVSDNQALHAAAKMARQQQLPLKAVYIETPLQWQQHDVGTRQLDFI
QRHLNCLQQSLAALGVELELWHCDDFNGVQQLWQSRMQQHDIAAIFAGREPELNELRRDQ
ALIEAGLPLNLTDEHCILAPGTVVNQNGEMYRVFTPFFKRWREIASAQQFQPVKAPVPLG
PALSVAEPISFSVATGDSELWRAGEGEAKQLLQQFVANHAADYKQQRDFPALDGTSSLSP
YLAIGVISPRQCLATLLAQFPEALVDDTSPGRCWLSELVWREFYRHLLQAYPNLSMGANF
NPLGAQIAWRDDQQAFDAWCEGRTGYPIVDAAMRQLNRTGWMHNRLRMITASFLTKHLLI
DWHRGERWFRRQLLDGDLAANNGGWQWSAGTGCDAQPYFRIFNPMTQSEKFDPDASFIRK
YVPEVRDWPLKQIHHPESRVNGHLFAVSDYPTPIVDHSAARERALDRLSVLKKAN
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcaacggtttatatctggtttcggcaagacttacgtgtcagcgacaaccaa
gccttgcacgcggcagccaaaatggcgcggcagcagcaactgccgttaaaagcggtttat
atcgaaacgccgttgcagtggcagcaacatgatgttggcacgcggcagttagattttatt
cagcgccatctcaattgcttgcagcaatcgctggcagcgcttggggttgaattagagcta
tggcattgtgatgactttaatggcgtacaacagctgtggcagagccgcatgcagcagcac
gatattgctgccatttttgccgggcgcgagcccgaactcaatgaactgcgccgcgatcaa
gcactgattgaagcagggttgccactcaacctcaccgacgaacattgcatcttagccccc
ggcacagtagtgaatcagaacggcgagatgtaccgcgtatttactccattttttaaacgt
tggcgtgagattgccagcgcgcagcaatttcaacctgtcaaagcgccggtgccgcttggg
ccagcattatcggttgctgagccgattagcttctcggtggccactggcgatagtgaacta
tggcgtgctggggaaggcgaagcgaaacagttgctgcagcagtttgtcgcgaatcatgcg
gctgactacaagcagcagcgggattttccagcacttgatggcaccagcagcttatcgcct
tacttggcaattggggtgattagtccaaggcaatgtttggcaacgctgttggcgcaattt
cctgaagcgctggtggatgacactagcccaggccgttgttggttgtcggaattggtctgg
cgcgaattttatcggcatctgctgcaggcttaccccaatttaagcatgggcgctaacttc
aatccgctcggggcacaaattgcgtggcgcgatgatcaacaggcgtttgatgcttggtgt
gaaggtcgcaccggctatcccatcgttgatgctgccatgcgtcagctcaatcgcactggc
tggatgcacaaccggctgcggatgatcaccgccagttttcttactaagcatctgttgatt
gattggcatcgtggcgaacgctggtttagacgacaactgctggatggtgatctggctgcc
aacaatggtggctggcaatggtcggcgggcacaggctgcgatgcgcaaccctatttccgc
atctttaaccctatgacacaaagcgaaaaatttgatcctgacgccagctttattcgtaag
tacgtgccggaagtgcgtgattggccgttgaagcagatccaccatccagagagccgtgtt
aatggccatctgtttgcggtcagcgattacccaacgccgattgtggaccatagcgccgcg
cgggaacgtgccttagaccgtttatcggtgttgaagaaagctaattaa
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