Shewanella avicenniae: JYB87_04960
Help
Entry
JYB87_04960 CDS
T07845
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
savi
Shewanella avicenniae
Pathway
savi00550
Peptidoglycan biosynthesis
savi01100
Metabolic pathways
savi01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
JYB87_04960 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JYB87_04960 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
savi01011
]
JYB87_04960 (mrdA)
Enzymes [BR:
savi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
JYB87_04960 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
savi01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
JYB87_04960 (mrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
CHASE6_C
EFG_C
Motif
Other DBs
NCBI-ProteinID:
QSX34600
LinkDB
All DBs
Position
complement(1146535..1148400)
Genome browser
AA seq
621 aa
AA seq
DB search
MHRKKRITMHDHAAEASLFKRRALFTFVCVLLLIGVLIGNLYHLQITAFKDYTTRSNDNR
IRVTPIAPSRGLIYDRNGKLLAENQPFYSLEVVPEKVKDIPAMLDELTKVIPISDDERQD
FMETLKFHRRFKPLTIKSRLTEEQVAEFSVNQYKFEGVSVEAGLDRFYPQGTLLTHVLGY
VARINNSDRSKLEQTGKWSDYAATNNIGKQGIEKFYESLLHGMPGHMEEEVNNLGRHIRT
LKVEPPEPGQDLYLTLDLELQKKAMELLGGRRGSIVAIDPRDGGILAMASSPSYDGNHFV
HGISGKEYSHLLNSPDRPLINRATQGQYAPASTIKPLMALMGLDDKVVTEKTRVWDPGYW
QIPGVDRKYRDWKRWGHGWVDVYGAIVHSCDIYFYEMAYKTGIDHISNFMGKFGFGQNTG
VDIFEESAGNMPSRDWKRLKYNQSWYIGDTISIGIGQGYWTSTPLQLASAFTILANKGKH
YTPHLLKSIKDVTSKIDNPADQQPPIVLNDQRNWDVIAEAMRQTAHSSRFKDAPYTAAMK
TGTAQVFSVAEDEKYDADTIDEKLRDNALIVAYAPFENPKIVLAVVLENAGWGGANAGPV
AREMLDDFMLRDKWELHNAEH
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gtgcatagaaaaaagcgcatcaccatgcacgaccatgcggcggaagcatcgctatttaaa
cgccgcgcgctgtttacctttgtttgtgtgttactgctaattggcgtgttgattggtaac
ctttaccatctgcagatcaccgcatttaaagactacaccacccgctcgaatgacaaccgc
attcgagtgacccctattgctcctagtcgcgggttgatttacgaccgtaacggcaagctg
ttagccgaaaaccagccgttttactcgttagaagtggtgccagaaaaggtcaaagacatc
cccgccatgctggatgagctaactaaagtcattccgattagcgatgatgagcggcaagac
tttatggaaacgctcaaatttcatcgtcgctttaagccgttaaccatcaaaagccgcctg
accgaagagcaagtggctgaattcagtgttaaccaatataaatttgaaggtgtatcggta
gaagctgggcttgatagattctatccgcaaggcaccctgctgacccatgtgcttggctac
gttgcgcgcattaataacagtgaccgcagcaagttagagcaaacgggcaaatggtcggat
tacgctgctaccaataatatcggcaagcaagggattgagaaattttatgaatccttgctg
cacgggatgcccggccatatggaagaggaagtaaacaacctcggccgtcatatccgtacc
cttaaagtcgagccgccagaaccagggcaagatctgtatctcacactggatttagagctg
cagaaaaaggccatggaattacttggcggtcgtcgcggctccatagtggcgattgacccg
cgtgatggcggcattctcgccatggcatccagcccgagttatgacggcaaccactttgtc
catgggattagcggcaaggagtatagtcatctgctgaactcgccggatagaccattaatt
aaccgcgccacccaaggccagtacgcaccagcatccaccattaaaccgttaatggcattg
atgggattggatgacaaagtggtcactgagaaaacccgtgtgtgggacccgggctattgg
cagatccccggagttgaccgcaaataccgcgactggaagcgttgggggcatggctgggtg
gatgtctatggtgcgattgtgcactcgtgcgatatctacttctacgagatggcctacaag
accggcattgatcacatcagtaactttatgggcaaatttggttttggccaaaataccggt
gtggacattttcgaagaatccgccggcaatatgccatctcgcgattggaagcggctcaaa
tataaccaatcttggtatatcggtgacaccatctccatcggcattggccaaggctactgg
acttcaacgccattgcagctggccagcgcatttaccatcttagccaacaaaggcaaacac
tatacaccgcatctgctgaagtcgattaaagacgtgacctcaaaaatcgataatcctgct
gatcagcagccgcccattgtgctgaacgaccagcgtaactgggacgtcattgccgaggcg
atgcggcaaacggcccatagctcgcgctttaaagacgccccctacacagcagcgatgaaa
acgggtaccgcgcaggtgtttagcgttgctgaagatgaaaaatatgatgctgataccatt
gatgaaaaactgcgcgacaacgccttgattgtggcctacgcaccgtttgaaaaccccaag
attgtattggccgtagtactcgaaaacgccggctggggtggtgctaacgcaggcccggtt
gcccgagaaatgctcgacgattttatgctgcgtgataagtgggagttgcacaatgcagaa
cactaa
DBGET
integrated database retrieval system
