Shewanella avicenniae: JYB87_05340
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Entry
JYB87_05340 CDS
T07845
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
savi
Shewanella avicenniae
Pathway
savi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JYB87_05340 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
savi03021
]
JYB87_05340 (rpoD)
Transcription machinery [BR:
savi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JYB87_05340 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
Motif
Other DBs
NCBI-ProteinID:
QSX34661
UniProt:
A0ABX7QUQ9
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All DBs
Position
complement(1211635..1213488)
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AA seq
617 aa
AA seq
DB search
MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAP
DADDIMMSEDNTDDDAAEEAAAALASVENELGRTTDPVRMYMREMGTVELLTREGEILIA
KRIEEGINEVQSSVAEYPQAIAMILEQYDQYEADQIRLSDIISGFVNPDEEDVGPTATHI
GSELSEDELDDEDDMDDDEDEESEDGDSEDDGNKGPDPEEARERFTQLRTAYENTLKIIE
EKGRNHPVAVGALFEIGEIFKEFRLVPKQFDRLVKNMRDMMDKVRVQERLIMKLCVEYSK
MPKKNFVKLFSGNEANPQWFFDEIAAGKPYSDALKAVEEDVVRCHSKLHAVEAETGLNIT
AIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT
SESLKQATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEILKSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactccgcagtcgcaactcaagctgttgcttgcaaaaggtaaagagcagggc
tacctaacgtacgccgaggttaacgaccacctgcctgctgacatggtcgactctgaccag
atcgaagatattatccagatgataaatgacatgggtatccgcgtattcgaagaagcgccg
gacgccgatgacattatgatgtctgaagacaacaccgatgatgatgcagctgaagaagca
gctgcagcgctggcatcggtagaaaacgaattgggtcgtaccactgacccagtgcggatg
tacatgcgcgaaatgggcacagttgaactgttaacccgcgaaggtgaaatcctgatcgcc
aaacgtattgaagaaggtatcaacgaagtacaaagctctgtggctgaatacccacaagcg
attgcgatgatcctggaacaatacgaccagtacgaagcagatcaaattcgtttgtcagac
attatctctggatttgtcaatcccgacgaagaagatgttggcccaacggcaacccatatc
ggttcagagctgtcagaagatgagctcgatgacgaagatgatatggacgatgatgaagac
gaagaaagcgaagacggcgacagcgaagatgacggcaacaaaggacccgatcctgaagaa
gctcgtgaacgctttactcagctgcgtactgcttacgaaaacaccttaaaaatcattgaa
gaaaaaggccgtaaccacccagtagctgtgggcgcactgtttgaaattggcgaaatcttc
aaagagtttcgtttagtgcctaagcagtttgatcgtcttgtgaaaaacatgcgtgacatg
atggataaagtgcgtgttcaagagcgcctgatcatgaaactgtgtgttgaatactcaaaa
atgccgaagaaaaacttcgtgaagctgttcagcggtaacgaagctaatcctcagtggttc
tttgatgaaatcgctgcgggcaagccatattcagacgcattgaaagcagttgaagaagac
gtagtacgttgccatagcaaattgcatgcggttgaagctgaaacgggcctcaacatcacc
gccattaaagacatcagccgtcgtatgtcaatcggtgaagccaaagctcgccgtgcgaag
aaagagatggttgaagcaaacttacgtctggtaatttctatcgcgaagaaatacaccaac
cgcggtctgcaattcttggacttgatccaagaaggtaacatcggtctgatgaaagcggta
gacaagttcgaataccgtcgtggttacaaattctcgacctatgcaacttggtggatccgt
caggcaattactcgctctattgctgaccaagcacgcacgattcgtattccggttcacatg
attgaaaccatcaacaaactgaaccgtatttcgcgtcaaatgctgcaagagatgggacgc
gaaccatcaccggaagaactggctgagcgcatgatgatgcctgaggataaaatccgtaag
gtactcaaaatcgccaaagagcctatttcgatggaaaccccaatcggtgatgacgaagat
tcacatttgggtgactttatcgaggacaccaccctcgaattgccgctcgacagcgccact
agcgaaagcttgaaacaagcaactcacgaagtgctcgctggtttgactgcacgtgaagca
aaagtattgcgtatgcgtttcggtatcgacatgaacactgaccacactttggaagaagtg
ggtaaacagttcgacgttactcgtgaacgtattcgtcagattgaagcgaaagcgttacgc
aaactgcgtcacccaagtcgttctgaaattctgaagtcattccttgatgaataa
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