Shewanella avicenniae: JYB87_05830
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Entry
JYB87_05830 CDS
T07845
Name
(GenBank) transcriptional regulator GcvA
KO
K03566
LysR family transcriptional regulator, glycine cleavage system transcriptional activator
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
savi03000
]
JYB87_05830
Transcription factors [BR:
savi03000
]
Prokaryotic type
Helix-turn-helix
LysR family
JYB87_05830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
HTH_5
Motif
Other DBs
NCBI-ProteinID:
QSX34754
LinkDB
All DBs
Position
1317191..1318102
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AA seq
303 aa
AA seq
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MSKRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRRNRSL
LLTEEGQSYFLEIKDIFTQLADATDRLLARSAVGSLTVSMSPSFAIQWLVPRLAKFSEKN
PDIDVRIKAVDGESGSLTDDVDVAIYYGLGIWPGLRADKLRNEVLIPVCSPMLLKGSKPL
AQPSDLKFHTLLHDMSRQDWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVALGY
SVLAKPDIQAGRLVCPFQEVLVSKDAYYLVCQQKHAELGKIVAFREWMLEMFAEESRSEL
LPG
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcgacttccgcctcttaatgccgttaaggcattcgaagctgcagccagacac
ttaagtttcacccgcgccgctgaagagttgtttgttactcaggcggcggtgagtcaccag
ataaaagcgctggaagactttttaggcttgaaactctttcgccgccgcaatcgctcgcta
ctactcacggaagaagggcagagctattttctcgaaatcaaagacattttcacccagctc
gctgatgcgaccgatcgcctgcttgcgcgcagtgccgtgggttcgctcacggtcagcatg
tcgccaagttttgcgattcagtggttggtgccgcgccttgccaaatttagcgagaagaac
cccgatattgacgtgcgcatcaaagcggtggatggtgagtcaggctcgctgaccgatgac
gtggatgttgcaatctattacggtttgggtatttggccagggttgcgtgccgataagctg
cgcaatgaagtgcttattcctgtgtgttcaccgatgttgctcaaaggttctaagccgtta
gcacagccgtctgatcttaaattccatacattactgcatgatatgagccgccaagattgg
caagcatggttccgtcagtgtggtgttaccgatgtcaacgtcaatcaagggccaatcttc
agccattcatcgttggtgctgcaagccgcggcgcatgggcaaggggtggcgttgggctac
agcgtattggcgaaacccgatattcaagcgggtcgactcgtgtgtccatttcaagaagtg
ctggtcagcaaagacgcctactatctggtttgccaacaaaaacatgcagaactaggcaaa
atcgtcgccttccgcgagtggatgttggagatgtttgccgaggaatcgcgtagtgaattg
ctccccggataa
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