Shewanella avicenniae: JYB87_06680
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Entry
JYB87_06680 CDS
T07845
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
savi
Shewanella avicenniae
Pathway
savi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYB87_06680 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_06680 (ung)
Enzymes [BR:
savi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
JYB87_06680 (ung)
DNA repair and recombination proteins [BR:
savi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JYB87_06680 (ung)
Prokaryotic type
JYB87_06680 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
QSX34902
LinkDB
All DBs
Position
complement(1512255..1512929)
Genome browser
AA seq
224 aa
AA seq
DB search
MSTELTWHSLLHDERNQPYFLQILHTINQLRLEGKRIYPAQADTFNAFKLTPFAQLKVVI
IGQDPYHGANQAHGLSFSVPAGVSPPPSLQNIFLELQHTIPDFQLPNHGDLSDWAKQGVL
LLNTVLTVEAGKAQSHTELGWQRFTDKVIEVINLHHQGIVFMLWGRHAAEKGAKVNRHKH
LVLRAAHPSPFSANKGFFGCNHFNLANQYLQHHGKAMIDWQLPR
NT seq
675 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagaactcacttggcacagtttgctccatgatgagcgtaatcagccctacttc
ctgcaaattcttcatacgattaaccagctaagattagaaggtaagcgcatctacccagcg
caagccgatacctttaacgcctttaaactcacaccgtttgcccagttaaaagtagtgatt
attggccaagatccctatcacggggcaaatcaggcgcacggactcagcttctcagtccct
gcgggtgtttcaccgccaccttcgctgcaaaatatctttttggagctccagcacacgatt
cctgactttcaactgccaaaccatggcgatttaagtgactgggcgaaacaaggtgtgctg
ttacttaacactgtgttgaccgttgaagcgggcaaagcgcaatcacacacggagctaggt
tggcaacgttttaccgataaagtaattgaagtgattaatctgcatcatcaaggcatagta
ttcatgctgtgggggcgccatgccgccgagaaaggcgccaaggttaatcgtcacaagcac
ttagtgctgcgtgccgcccatccgtcaccgttttccgccaataaaggcttctttgggtgt
aaccatttcaacctcgccaatcagtacctacagcatcatggcaaagcgatgatcgattgg
cagttacctagataa
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