Shewanella avicenniae: JYB87_07535
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Entry
JYB87_07535 CDS
T07845
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
savi
Shewanella avicenniae
Pathway
savi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYB87_07535 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
savi03019
]
JYB87_07535 (rne)
03009 Ribosome biogenesis [BR:
savi03009
]
JYB87_07535 (rne)
Enzymes [BR:
savi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JYB87_07535 (rne)
Messenger RNA biogenesis [BR:
savi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JYB87_07535 (rne)
Ribosome biogenesis [BR:
savi03009
]
Prokaryotic type
rRNA processing factors
JYB87_07535 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QSX35060
LinkDB
All DBs
Position
complement(1708047..1711439)
Genome browser
AA seq
1130 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GVERHGFLPLKEIAREYFPQGYSFQGRPNIKDVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMEELEVPNGMGLIVRTAGVGKASAEL
QWDLKVLLHHWNAIQEAASSKVAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEDA
KQHVALVRPDFVERVKFYKAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRHDRARVQIGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTAQIEAIVPVDVAAFLLNEKRKAIRITEERHDVEVYIIPDAHMTTP
DYRVVRHRTDDEIDEASYQRTEKPESKLYEPRKLERAASPTPALSGFATPAKTDIEAAAP
AAKAAPAKAKVEAAAPQQPGLLARLFKALSSLFSGSAAEEAQPKADSKPTNNRNGNRTRN
NERNDRRRKNPRNNSKQTAEVDKQETTTETAKADKPTNSRRRNQKADNAKPNRNERKAKA
EDVVDETINDEAQQPKQEVVRERRQRRDMRRKVRIEQDGSPVEQTAQAPVQAEPVVAAQE
TAPAKQDKPRRSRRNEDKRQDKAEDNAVDVSNVEAISEDAAPTPIVTEATALQAEQLELL
ANAEEAVEVEASDASTDENGREKREGRRSRRSPRHLRAAGQRRRRESEDNSNEEASAEVA
ANAAPVTETDVAVSAVEVTTEAATAVAAATSAPATEVEITPVDTVTTPVVTAEAAEPVAT
PVTEPAATPVAAEVNVAPAASTVAVAPATDVAEEAASAPVSAPAAVEDVKVVAESIAAEP
AVVEAAAEAQVAPAVEAVVAEAPAATVEVTAAPVAPVAPAPVAPATAEAATATEVLVEPA
KSEPKQSAASAPMAKPAAVAVAAKPAATTTEAATADGQVADANEATPAAVKVPRASRYQS
MVGAQMTKPEVEQRDHVDVPQGHQYATNGQTVAPKAHNANSASSAMAKPE
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgcttatcaatgcaactcaatctgaagagttgcgcgttgccctagtcgat
gggcaacagctttacgatctggatattgaaagtccaggtcacgaacagaaaaaagcgaat
atctacaaaggtaaaatcactcgcgtagaaccttccttagaagctgcttttgttgactat
ggtgttgaacgccatggttttctgcctttaaaagagatcgcccgcgaatacttcccacaa
ggttattctttccaaggtcgtcctaacatcaaggacgtagtgaaagaaggccaagaagtt
atcgtgcaaattgataaagaagagcgtggcaacaaaggtgcagcgctgactacctttatc
agtttggcaggctcttatctggtattgatgccaaacaaccctcgtgcaggcggtatttct
cgccgtatcgaaggcgatgagcgcactgaactaaaagaagcgatggaagagctcgaagtg
ccaaatggcatgggcttgatcgtgcgtaccgccggcgtgggtaaagcctctgccgaactg
caatgggacttaaaagtactgttgcatcattggaatgccattcaagaagcggccagcagc
aaggttgcgccattcttaatccatcaagaaagtaacgtcattgtacgcgcaattcgtgac
tacttacgtcgcgacgtgggcgagatcctgattgaccatccacgtatttacgaagatgcc
aaacagcacgttgccttggtgcgtccagactttgttgaacgggtaaagttctacaaagcg
gaagtgccattgttcacccattatcagattgaatctcagattgaatccgccttccaacgc
gaagtgcgcttgccctctggtggctcaatcgttatcgacccaactgaagcattgacctca
atcgatatcaactccgcccgcgcaaccaaaggcggcgatattgaagaaacagcgcttaac
accaacttagaagccgccgatgaaatcgcccgccaattgcgcttgcgtgaccttggtggt
ttggtggtaatcgacttcatcgatatgaccccagtgcgtcaccaacgtgaagtagaaaac
cgtctgcgtgatgcggtacgtcatgaccgtgctcgcgtacaaatcggccgtatttcgcgc
tttggtttgatggaaatgtcacgccaacgtctgcgtccatcgctagaagaatctgctgcg
cacatctgccctcgctgtcatggccaaggcactattcgtggcactgaatcattagccttg
tcgattctgcgtttgatggaagaagaagccatcaaagaaaacaccgcgcaaattgaagcc
attgtgccagttgacgtcgccgccttcctgctgaacgaaaaacgtaaagcgattcgtatc
accgaagaacgtcacgacgttgaagtgtacatcattccagatgcgcacatgaccacacca
gattaccgtgtagtacgtcatcgcaccgacgatgaaatcgacgaagccagctaccaacgt
acagagaagccagagtctaagctgtatgaaccgcgtaagcttgaacgtgcggcatcgcca
acccctgcgttaagcggttttgctacaccggcaaaaacagatattgaagcggctgcgcca
gcggctaaagctgcgcctgccaaggcaaaagttgaagctgccgcgccacaacaacctggc
ttattagcccgtttgtttaaagcgctgtcttcattgttctctggcagtgcagcagaagaa
gcacaacctaaggctgatagcaaaccgactaacaaccgtaacggtaatcgcacccgcaat
aatgagcgcaatgaccgccgtcgtaagaaccctcgcaacaacagcaaacaaaccgctgaa
gttgacaagcaagagacgacaactgaaaccgctaaagctgacaagccaactaacagcaga
agacgcaatcagaaagcggataacgccaagcctaaccgcaatgagcgtaaagccaaagct
gaagacgtcgtagatgaaaccattaacgatgaagcgcaacaaccaaagcaagaggttgta
cgtgaacgtcgtcaacgtcgcgatatgcgccgtaaggttcgcattgagcaagacggtagc
ccagtagagcaaaccgctcaggcgcctgtgcaagctgagcctgtcgtcgcagctcaagaa
actgcgccagcaaaacaagataagccacgtcgtagtcgccgtaatgaagacaaacgccaa
gacaaagctgaagacaatgcagttgacgtcagcaatgtcgaagcgataagcgaggatgca
gcaccaacgccaatcgtaactgaagccacagcgctacaagctgagcaattggaactgttg
gctaacgcagaagaagcggttgaagttgaagcctctgatgcgagcaccgatgaaaacggc
cgtgaaaaacgtgaaggtcgccgtagccgccgcagcccacgccatctgcgtgcagcgggt
caacgtcgtcgccgtgaatctgaagacaacagcaatgaagaagccagtgctgaagttgca
gcaaatgcggcgccggttactgaaactgatgttgccgttagcgccgttgaagtgactact
gaagcagcaacagccgttgccgcagcgaccagtgctcctgcaactgaggtagaaattacg
ccagtagacacggttacaacgccggtagtcactgctgaagcagctgaacctgttgccact
ccggtaacagaaccagcggccacgccagttgctgctgaagtgaatgttgccccagccgcc
tctacagtagcggttgcgccagcgactgacgtagcagaggaagcagcaagtgctccagtg
tcagcgccagcagcggtagaagacgttaaagtagttgctgaatcgattgccgctgagcca
gcagtggttgaagctgcagctgaagctcaagttgctccagcggttgaagccgtggtagcg
gaagctccggctgcaactgtcgaagtgacagcagcgccggtcgcgcctgtagcacctgct
cctgtagcgccagcaacagctgaagcagccactgccaccgaggtattagttgaaccggct
aaaagcgagccgaagcaaagtgctgcatcagcccctatggcgaagcctgcagcagttgca
gtagccgctaaacctgcagcaacgaccactgaagctgcaaccgctgatggtcaagttgcc
gatgctaacgaagcaactcctgcagcggtgaaagtgccgcgtgcaagccgttatcaatca
atggttggcgcgcagatgaccaaaccagaagttgagcagcgtgaccacgttgatgtgcca
caaggccatcaatacgcgactaacggtcaaaccgtagcgccaaaagcacacaatgcgaac
agcgcgtcatcagcgatggcaaagcctgaataa
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