Shewanella avicenniae: JYB87_07615
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Entry
JYB87_07615 CDS
T07845
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
savi
Shewanella avicenniae
Pathway
savi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
JYB87_07615 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_07615 (sbcB)
Enzymes [BR:
savi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
JYB87_07615 (sbcB)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
JYB87_07615 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB87_07615 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JYB87_07615 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QSX35442
LinkDB
All DBs
Position
complement(1724262..1725677)
Genome browser
AA seq
471 aa
AA seq
DB search
MTQAPNTATIFWHDYETFGANPAQDRPAQFAGIRTDLDLNIVGEPETFYCRIAPDYLPAP
EAIFVTGITPQLANSKGLPETEFMGRIQHIFSQPNTCVAGYNSLRFDDEVTRYGFYRNFI
DPYAREWQQGNSRWDIIDLVRACYALRPDGINWPTREDGAPSFKLEHLTAANGLGHEKAH
DAMSDVYATISLARLIKQQQPRLFDYYFSLRKKQKAAEFIDVLNMTPLVHVSSKLPASQG
CISLVAPLAYHPTNKNAIICVNLAMDVQPLLDLDVEQLRERMYTARADLADDELPVGIKL
IHLNKCPFIAPAKTFSDERAAALGFDKDFARTQFKKLKNAAYVRQKLNALFESESFKEIA
DPDLMLYSGGFFSPADKAKMEMIRNTAPQNLAALELSFDDVRLPEMLFRYRARNYPATLS
DSENRRWHEFCQHRLNDPDYVLHLENLLEETAENEGKQKLLKALVLYLQSL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagcgcccaacacagcgaccatattttggcacgactacgaaactttcggggca
aaccccgcccaagatcgcccagcacagtttgcgggtatccgtaccgatcttgacttaaat
attgtgggcgagcctgagacattttactgccgcatcgcaccggattacctgcctgcacca
gaggccatcttcgtcacgggtatcacgccgcaattagccaacagtaaagggttacctgag
actgaattcatggggcgtatccaacacattttcagccaacccaatacttgtgtagctggg
tacaattcgctgcgtttcgatgatgaagtcacccgctatggcttttatcgcaactttatc
gatccttatgcgcgagaatggcagcaaggcaactctcgctgggacattatcgatttagtc
cgagcttgttatgcgttacggcctgacgggattaattggccaacgcgtgaagacggcgca
ccgagttttaagttggagcatctcaccgcagccaatggcctcggccatgaaaaagcccac
gatgcgatgtcagacgtctatgccactatttcgttagcgcgcctgattaaacagcaacag
ccgcgcctgtttgactattatttttcactgcgtaaaaagcagaaagcggcagaattcatc
gatgtactgaatatgacgccgctggtgcatgtcagctctaaattgcccgcaagccaaggt
tgcatcagtctggttgcgccgctggcgtatcatccgaccaacaaaaacgccattatctgc
gtgaatttagccatggatgtccaaccgctactcgatctggatgtcgaacaactgcgagag
cggatgtacaccgcccgagccgatctcgccgatgatgaattgcctgttggcattaagctg
attcacttgaataaatgtccgtttatcgcaccggcgaaaacatttagcgatgaacgcgca
gccgcattggggtttgataaagattttgcgcgcacccaattcaaaaagttaaaaaatgcc
gcctatgtgcgtcaaaagctcaatgcgctgtttgaaagcgaaagcttcaaagagattgct
gatccagaccttatgctttactcagggggatttttctcgcctgcagataaagcaaaaatg
gagatgattcgtaacaccgcgccacaaaatttagcagcgctcgaactttcatttgacgat
gtgcgtctgcctgagatgctgtttcgctatcgcgcgcgcaactaccctgccactctcagc
gatagtgaaaatcgacgctggcatgaattctgtcaacatagattaaatgaccctgactat
gtgttgcatctcgaaaacctgctggaagaaactgctgaaaatgagggcaaacagaagctt
ttgaaagccttggtactttacctccaatcgctttag
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