Shewanella avicenniae: JYB87_07740
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Entry
JYB87_07740 CDS
T07845
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
savi
Shewanella avicenniae
Pathway
savi03030
DNA replication
savi03430
Mismatch repair
savi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYB87_07740
03430 Mismatch repair
JYB87_07740
03440 Homologous recombination
JYB87_07740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
savi03032
]
JYB87_07740
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_07740
Enzymes [BR:
savi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JYB87_07740
DNA replication proteins [BR:
savi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JYB87_07740
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JYB87_07740
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
QSX35099
UniProt:
A0ABX7QUD0
LinkDB
All DBs
Position
1752913..1753596
Genome browser
AA seq
227 aa
AA seq
DB search
MASWRHRIGLSYQLWRAQDGLADYYAELSQVLKKDSLAGIPLVAIDLEMTGLNAQIDQII
SVGIVPIEQQRLQMAGAEHRLVAINGSVGQSATIHGIVDRQLQQDVMSQQEMLHWLLQQT
YGKLMVFHHGMLDITFLSKLTEQVFNRPLHLPIIDTLQIEQRRVMRDRHVIEHGSLRLAA
CRKRYKLPIYVAHNALIDAAACGELFLAQTAFNAWSKQPLDDYLFWF
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atggcaagctggcgacatcgtatcgggttaagctatcagttgtggcgagcgcaagacggg
ttggcggactactatgcagagctaagccaagtgcttaaaaaggactcgcttgcgggcata
ccactcgttgcgattgacctcgaaatgacgggcttgaacgctcaaattgaccaaattatc
tctgttggtatcgtgcctattgaacagcagcgattacagatggctggcgctgagcaccgg
ttagtggctatcaatggcagtgtggggcagagtgcaacgatccatggcattgtggatcgg
caactgcagcaggatgtgatgtcacaacaagagatgctgcattggttgttacaacaaact
tacggcaaattgatggtgtttcatcatggaatgctggatattacgtttctttcgaagctg
acggagcaggtatttaaccggccgctccatttgcccatcattgatacattgcaaattgag
caacgtcgagtgatgcgcgatcgacatgttattgaacacggcagtttacgcttagccgct
tgtcgaaagcgttataaattgccgatttacgtcgcgcataacgcgctgattgatgctgct
gcttgcggtgaattatttttagcgcaaaccgcatttaatgcctggtctaagcaaccgctg
gatgattatttgttttggttttga
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