Shewanella avicenniae: JYB87_08480
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Entry
JYB87_08480 CDS
T07845
Symbol
gyrA
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
savi03032
]
JYB87_08480 (gyrA)
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_08480 (gyrA)
Enzymes [BR:
savi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
JYB87_08480 (gyrA)
DNA replication proteins [BR:
savi03032
]
Prokaryotic type
DNA Topoisomerases
JYB87_08480 (gyrA)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JYB87_08480 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
QSX35215
UniProt:
A0ABX7QW47
LinkDB
All DBs
Position
1909762..1912455
Genome browser
AA seq
897 aa
AA seq
DB search
MTDQASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWN
KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAM
RYTEIRMEKLAHQLLADLDKETVDYVPNYDGTEMIPEVLPTRVPNLLINGSSGIAVGMAT
NIPPHNITEVIKGCLALIEEPELSIEQLIEYIPGPDFPTAAIINGRKGIEDAYRTGRGKV
IMRARASFETDEHNGRERIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDG
MRIVIEIKRGEVAEVVLNNLYAQTQMQCSFGINMVALANGQPKLFNLKEMLEAFILHRRE
VVTRRTVFELRKARDRAHILEALAVALSNIDPIIELIKASASPADAKTGLMAQGWELGNV
REMLEKAGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEKILQEYVD
LLDIIAGLLHILRSPARLMEVIKEELDQVLADFGDERRTEITASSADINLEDLITEEDVV
VTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVERLLVANTHDTILCFSDFGKLY
WMRVFELPLASRQSRGKPIVNLLPLSEGERITAILPVREYEEGKYIIMATSHGTVKKTAL
TEYSRPRSNGIIAVNLKDGDQLIGVDITDGSNEIMLFSDAGKVVRFKEAEESIVTDEDGN
PVLDENGEVQVNFKGVRPMGRNATGVRGIALEDGQKVVSLIVPKSEDPILTVTENGYGKR
TAIDEYPSKSRATKGVVSIKVSDRNGPVVGAVQAAENDEIMLISDKGTLVRTPVSGVSLI
GRNTQGVTIIRTADDERVVGLQRIDEIQSNGDDIDSEVVEDETSATTPDAPQDDAEE
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaggcttcatcaatttcaccaataaatattgaagacgaactcaaaaattcc
tacctcgactatgcgatgagcgtaatcgttggacgggccctgccagatgttagggacggt
ctcaaaccagttcaccgtcgcgtcttatttgcgatgaacgagctgaaaaacgactggaat
aaaccttataagaaatcggcccgtgttgtcggcgacgtaatcggtaaataccacccgcac
ggcgatagcgcggtatatgacaccatcgtgcgtatggcgcagccgttctcgttgcgttac
accctggttgatggtcaaggtaacttcggttctatcgatggtgacgcggcagcggcaatg
cgttataccgaaatccgcatggaaaagctggcacaccaactgctggctgacttagataaa
gaaactgtggattatgtgccgaactacgacggtacagaaatgatccctgaagtactgcca
acgcgtgtacctaacctgctgattaacggttcatcgggtatcgctgttggtatggcaacc
aacattccgccacacaacatcaccgaagtgatcaaaggttgtttggcgttgattgaagag
cctgaactgtcgattgagcagttgattgaatatattccgggcccagatttcccaaccgct
gcaattatcaatggccgtaaaggtattgaagacgcctaccgcactggtcgcggcaaggtg
atcatgcgcgcgcgcgcttcatttgaaaccgatgaacataacggccgtgagcgtattatc
gtcaccgaaatcccatatcaagtgaacaaagcacgcttgattgagaagattgcagagctg
gttaaagataaacgtatcgaaggtattagcggcctgcgcgatgagtctgacaaagacggt
atgcgcatcgttatcgaaattaagcgcggtgaagttgcagaagttgtgttgaacaacctg
tatgcccaaacccagatgcaatgttctttcggtatcaacatggtggcgttggcaaatggc
caacctaagctattcaacctgaaagagatgctggaagcttttattctgcatcgccgcgaa
gtggttacccgtcgtaccgttttcgaattgcgcaaagcacgtgaccgtgcccatatattg
gaagcactggctgttgcgttgtctaacatcgatccaatcattgagttgattaaagcatct
gcgagtccagcagacgccaaaactggcctgatggcacaaggttgggaactcggtaacgtt
cgcgaaatgcttgaaaaagctggtgatgatgcagctcgtccagaatggcttgaaccagag
tatggcattcgtgacggtctctactatctgaccgaacaacaagcacaagcaattcttgat
ctgcgcttgaacaagctgaccggtctagaacacgaaaaaatcctgcaagaatatgttgat
cttctggatatcattgctggtttattacatatcctgcgtagcccagcacgcttgatggaa
gtgatcaaagaagaacttgaccaagtgttggctgattttggcgatgaacgtcgcacagaa
atcactgcatcatcagcggatataaatctcgaagatttgatcactgaagaagacgtggtc
gtgacactgtcacacttaggttatgcaaaataccaaccgctgacggactatcaagcgcag
cgccgtggtggtaaaggtaaagctgcaaccaaagtaaaagatgaagactttgtcgaacgt
ctgttggtggctaacactcacgacaccattttgtgtttctcagactttggtaagttgtat
tggatgcgcgtatttgaattgccactggcaagtcgtcaatcacgcggtaagccaattgtg
aacttgttacctttgtcggaaggtgaacgtatcacagcgattctgccagtacgtgaatac
gaagaaggcaaatacatcatcatggcgacctcacacggcaccgtgaagaaaaccgcattg
actgaatatagccgtccgcgtagcaacggtattattgccgtgaacctgaaagatggtgac
cagttgatcggtgtggatattaccgacggcagcaatgagatcatgctgttctctgatgcg
ggaaaagtggtgcgctttaaagaagcggaagaatccattgtcactgacgaagacggtaat
ccagtattggatgaaaacggtgaagtacaagtgaacttcaaaggtgtgcgcccaatggga
cgtaacgctaccggtgttcgtggtattgcattagaagatggccaaaaagttgtatcactg
attgtgccgaaatctgaagatccaatcctgacagttaccgaaaacggttacggtaagcgt
acggctatcgatgagtatccatcgaagagccgtgcaaccaaaggtgtagtatctattaaa
gtctcagatcgtaacgggccggtcgttggcgcagttcaagccgctgaaaacgacgaaatc
atgctgatcagtgacaaaggtactttggttcgtactcctgtgtctggtgtgtcgctgatt
ggtcgtaacacccaaggtgtgaccatcatccgtaccgcagatgatgaacgagtggtcgga
ctgcagcgcattgacgaaattcaatctaacggcgatgatatcgattcggaagtagtggaa
gatgaaacctcagctactacgccagatgcgccgcaggatgatgccgaagagtaa
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