Shewanella avicenniae: JYB87_08605
Help
Entry
JYB87_08605 CDS
T07845
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
savi01011
]
JYB87_08605
Enzymes [BR:
savi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
JYB87_08605
Peptidoglycan biosynthesis and degradation proteins [BR:
savi01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
JYB87_08605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
LysM_RLK
HTH_28
HTH_23
LTD
WxLIP_HBD
Motif
Other DBs
NCBI-ProteinID:
QSX35450
UniProt:
A0ABX7QXS0
LinkDB
All DBs
Position
complement(1939285..1940817)
Genome browser
AA seq
510 aa
AA seq
DB search
MLAFLSGCQVSPQFISDSDNIDPDIVAEVNSQPETPEPTTPQQAPQVVEITDVWQRLRLQ
LNIPVPEQALVERYREWYLANPKHLAQISERAGPFLYLIVDAIEKRGLPMELALLPIVES
AFDPFAYSPGAASGLWQFTSPMARHFGLKINWWYDGRRDVPAATTAALDMMQYLYQKTGE
NWLYAIAAYNSGEGRILNAIKRNEAAGKPTDFWSLSLPSETERYVPQLLALADVIKHADQ
YGIQLAAIDNKPAVHVVDIGSQIDLAKAASLAEIDITDLQQLNPGYNHWATAPKGPHKLV
LPVDKAEEFSAALAALPAEERLNWVRYQIRRGDSLGLIAKKHRTTVDIIRSINNIKGNNI
VAGKHLLIPIAQQDATDYPLSAEQRVLAQQNRNSSRYSSKYQVKSGDSLWKIARQFKIST
SELANWNGLSAKDTLKPGKTLVIWHQDDNRKGVVRTVKYKVRNGDSLAAIASKFKVSVSQ
LRKWNQLNEKKYLQPGQMLTLYVDVTSSNS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgctggcctttttgtctggctgccaagtttcgccacagttcatcagcgacagtgacaac
atcgatcctgacattgtggcagaagttaattcgcaaccagagacacctgaaccaacaacg
ccacaacaggcaccccaagtggttgagattaccgacgtatggcaaagattgagattacaa
ctcaacataccagtgcctgagcaagcactagtcgaaagatatcgcgaatggtatttagct
aatccgaagcatctggctcaaatctctgaaagagctggtccgtttttgtatctgatcgtg
gatgcaattgaaaagcgaggcttaccgatggagttagccctgctgccaatcgtagaaagc
gcctttgatccttttgcctactctccgggagccgcatcgggtttatggcaattcacctca
cctatggcgcgccactttggactcaagattaactggtggtatgacggacgtcgtgacgta
ccagcggcaacaacggcagcgttagatatgatgcagtatctctatcaaaaaaccggcgaa
aactggttgtacgccatcgcagcctacaacagcggtgaaggacggatactcaacgccatc
aaacgcaacgaagccgctggtaagccaacagatttttggtcgctgtcattacccagtgaa
actgaacgttacgtaccacaattgctggcacttgcagacgtaattaagcatgctgaccag
tatggtattcagttagccgctatcgacaataaacctgctgttcatgtggtagatattggc
agccaaattgatttagccaaggcggcaagtttagctgagatcgatatcaccgacttgcag
cagctcaatccggggtataaccattgggcaacggcgccaaaagggcctcataaattagtt
ttgcccgtagacaaagctgaagagtttagcgcagcgttagcggcattgcctgctgaggag
cggttgaattgggtgcgttaccaaatccggcgtggcgattctcttgggctcatcgcgaaa
aagcaccgtacgacggtggatatcatccgctctatcaacaatatcaaaggcaataacatt
gttgccggtaaacacttgctgatcccaatcgcacagcaagatgctacagactatccctta
tcagcagagcaacgggtgctagcacagcaaaaccgcaatagcagccgttacagcagtaaa
tatcaagttaaatccggtgattcgttatggaaaattgcccgccagttcaagatcagcacc
agtgaattggcaaattggaatggtttgtctgccaaagacaccttaaaacccggtaaaaca
ttggtgatttggcaccaagatgacaatcgcaaaggtgtggtgcgtacggtcaagtacaaa
gtacgtaacggcgactcgctggcggcaattgccagcaaatttaaagtgagcgtgagccaa
ttgcggaaatggaatcagttaaacgagaaaaaatatctgcaaccagggcaaatgttaacc
ctgtatgttgatgtaaccagctcgaatagttga
DBGET
integrated database retrieval system
